Gene detail information of Glyur000923s00029694 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45400.1 | 3.00E-81 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003623719.1 | 5.67E-179 | Dihydroflavonol-4-reductase [Medicago truncatula] |
| COG | YP_002017749.1 | 2.00E-32 | NAD-dependent epimerase/dehydratase [Pelodictyon phaeoclathratiforme BU-1] |
| Swissprot | tr|Q40316|VESTR_MEDSA | 3.00E-153 | Vestitone reductase |
| trEMBL | tr|A2Q3Y3|A2Q3Y3_MEDTR | 2.00E-179 | NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABN08333.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00923 | 22812 | 25376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000923s00029694.1 | PF01370.16 | Epimerase | 8 | 242 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.136 |
| SRR1783600 | control | 27.878 |
| SRR1783602 | moderate drought stress | 24.873 |
| SRR1811619 | moderate drought stress | 24.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.114 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 265.141 |
| SRR2868004 | Drought Stress (root) | 428.300 |
| SRR2967015 | Control (root) | 388.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.579 |
| SRR9715740 | Leaf | 14.257 |
| SRR9715741 | Leaf | 54.245 |
| SRR9715739 | Root | 5.830 |
| SRR9715742 | Root | 10.923 |
| SRR9715743 | Root | 13.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 204.396 |
| SRR8749028 | MeJA induced 9h | 512.159 |
| SRR8749029 | MeJA induced 9h | 260.899 |
| SRR8749030 | Uninduced | 2092.214 |
| SRR8749031 | Uninduced | 3829.710 |
| SRR8749032 | Uninduced | 1888.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 277.753 |
| SRR8400027 | Control - Root | 170.701 |