Gene detail information of Glyur000921s00038773 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38140.1 | 4.00E-21 | plastid-specific ribosomal protein 4 |
| NR | XP_007152919.1 | 8.90E-59 | hypothetical protein PHAVU_004G171400g [Phaseolus vulgaris] |
| Swissprot | tr|O80439|RR31_ARATH | 2.00E-30 | 30S ribosomal protein S31, chloroplastic (Precursor) |
| trEMBL | tr|V7C6B2|V7C6B2_PHAVU | 3.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:ESW24913.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00921 | 103969 | 105228 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 44.259 |
| SRR1783600 | control | 50.022 |
| SRR1783602 | moderate drought stress | 39.382 |
| SRR1811619 | moderate drought stress | 38.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.137 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.177 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.195 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 148.780 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 143.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.019 |
| SRR2868004 | Drought Stress (root) | 18.827 |
| SRR2967015 | Control (root) | 18.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 113.681 |
| SRR9715740 | Leaf | 108.034 |
| SRR9715741 | Leaf | 92.030 |
| SRR9715739 | Root | 25.269 |
| SRR9715742 | Root | 13.779 |
| SRR9715743 | Root | 18.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.978 |
| SRR8749028 | MeJA induced 9h | 22.007 |
| SRR8749029 | MeJA induced 9h | 29.860 |
| SRR8749030 | Uninduced | 13.263 |
| SRR8749031 | Uninduced | 22.350 |
| SRR8749032 | Uninduced | 32.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.641 |
| SRR8400027 | Control - Root | 50.678 |