Gene detail

Gene detail information of Glyur000920s00028979.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02800.2	7.00E-174	protein kinase 2B
NR	XP_003519043.2	0	PREDICTED: protein kinase 2B, chloroplastic-like [Glycine max]
COG	YP_004571825.1	3.00E-26	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|O49840\|APK2B_ARATH	0	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|I1JBN3\|I1JBN3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02340.1}

Sequence

Transcript Sequence

>Glyur000920s00028979.1
TCCAACGTCAGTGTCTGTCTTCAATCTGCATTCATAGGCGAATCCAAAAAGATGTGTTCCTTTCATCCGAGTTGTGTGTTCCCATTTTTCTCCTCTGTTTCCCGANCCACAATCCCTCTGTTTCTTCTTTCTCTCTTCTCAACCCAAAGTTCATTCCTTTCCCTTCAACCACCCGAAATTCCCCTTCACTTCCTTGGAAATTGCAAATCAAAAGTCACTGCTTTTCTTCTCCTTTTATTCCCCTTCTCTCTCTCTCTCTCTTTCTCTTGTACTTGTTTCAGTTGCAGAAGCTCAGAAACTCAGAGAGTTAGTTGAGAATTTTGGCAGAGCCTAATGGGTAACTGCCTAGATTCCTCCGCTAAAGTTGATGCAGCTCAAAGCTCCAGATCCACTTCTGCAACCTCAAAAACTACTCCTTCAAGTTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTTAAGCCCTTCACATTCAATGAGCTGAAGAACGCCACCAGGAATTTCCGTCCCGATAGTCTTCTCGGCGAAGGGGGATTCGGTCATGTTTATAAGGGATGGATAGATGACCACACGTATCAAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGACATAAGGAGTGGTTGACTGAGGTTAATTACCTTGGACAACTACACCATCCTAATCTGGTTAAACTGATTGGTTACTGCTTGGAGGGAGAGAACCGGCTTTTGGTATACGAGTTTATGCCCAAAGGGAGCTTGGAGAACCATCTTTTTAGAAGAGGACCACAACCACTCTCTTGGTCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCAGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATTTACCGTGATTTTAAAGCTTCTAACATCCTTCTGGACGCGGAGTTCAATGCTAAACTCTCTGATTTTGGCTTGGCTAAGGCGGGTCCTACTGGCGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTGACGGCGAAAAGTGATGTATACAGCTTTGGGGTTGTTCTGCTTGAACTTTTGTCTGGAAGACGCGCGGTCGATAAATCAATAGCTGGTGTGGATCAGAATCTGGTGGACTGGGCAAAGCCATATTTGGGCGACAAACGAAGGCTATTCCGGATCATGGATTCCAAGTTGGAGGGGCAATACCCACAAAAGGGAGCCTTCATGGCTGCAACACTTGCTCTAAAATGCCTTGACAGGGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTCTAGCAACTCTTGAACAGATAGAAGCCCCAAAAAACGCAGGCCGGAATTCACATCTGGAACATCACAGATTCCACACCACCCCTGTGAGAAGGTCCCCGGCGCGAAACCGGACCCCGCCTTTGAATCTTACTCCCACTGCTTCTCCGCTGCCATCTCACCGGCATTCTCCTCGTGTGAACTGAGATTTGAACAATGAACATCTGTATGTAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00920	835	4245	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000920s00028979.1	PF07714.12	Pkinase_Tyr	79	354	1.80E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.261
SRR1783600	control	40.957
SRR1783602	moderate drought stress	31.760
SRR1811619	moderate drought stress	31.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.736
DRR006520	Root Summer glycyrrhizin high producing strain	54.015
DRR006521	Root Winter glycyrrhizin high producing strain	37.626
DRR006522	Root Winter glycyrrhizin high producing strain	36.265
DRR006523	Root Summer glycyrrhizin low producing strain	112.934
DRR006524	Root Summer glycyrrhizin low producing strain	112.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.729
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.029
SRR2868004	Drought Stress (root)	45.672
SRR2967015	Control (root)	40.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	112.184
SRR9715740	Leaf	116.059
SRR9715741	Leaf	162.698
SRR9715739	Root	76.757
SRR9715742	Root	91.803
SRR9715743	Root	85.823

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	92.203
SRR8749028	MeJA induced 9h	61.309
SRR8749029	MeJA induced 9h	98.196
SRR8749030	Uninduced	44.523
SRR8749031	Uninduced	43.303
SRR8749032	Uninduced	27.699

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.920
SRR8400027	Control - Root	46.939