Gene detail

Gene detail information of Glyur000919s00033056

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60240.2	4.00E-40	eukaryotic translation initiation factor 4G
NR	KEH22484.1	6.69E-62	eukaryotic translation initiation factor 4G-like protein [Medicago truncatula]
Swissprot	tr\|B9FXV5\|IF4G_ORYSJ	4.00E-46	Eukaryotic translation initiation factor 4G
trEMBL	tr\|A0A072TYB4\|A0A072TYB4_MEDTR	2.00E-62	Eukaryotic translation initiation factor 4G-like protein {ECO:0000313\|EMBL:KEH22484.1}

Sequence

Transcript Sequence

>Glyur000919s00033056.1
GTGGGACCTAAATGAGAAACTAAACAATATTTAGAAACCCAATTTAATGCCTAACCTACTGTATGGAAAGGCCAAATGAAAAACCAAACACACTCTAAAGCTTCCAGTGCTTATCGTTTGAGAAAATAGCCATAATGGTGAAAGGTGACACCGTGACAGCATGCTCCTAGCTGTTGGGTTGATCTTGATCCCTCCTTAAGTGAGAGCCAACTTAAAGTAAAAGAAAAAGAAATAAAATAAAAAGTGTTGTGTACGTGTGAACTTTAGTTATTGGGGTATTATTATTTTTTTGTCCAAATGGGGTACCTTTTAAAGGGATTAATAATCCCACTGAGTATGTGTGCACAGTGACGCAAGTGTGCAAAAGTGAGACGTGAGATGCAGGAATTGCACATTTGAAAGGCGAGCAGTAGCGGCGCAATTAGTTTCGGCTATGGCAGTTTTGAGAAGAGGGTCTCCAGCAGATGATTTGGTTCTCACAAAAAGAGGAGTATAATTGAACTCTCAAAATTCTGTTCCACTACTTATTCTGATCCCAACCACTGGTTCTTCAGGGGTTCAATTCAATCTCCTTTAGAGATGATGCACAAAGCTAAGATGAAGCATGAGGTGAATGAGGAAGAGGCTAAGCAGAGGCAGTTTAATGCTATATTGAGCAAGTTGACTCCTCAGAATTTCGATAAGCTTTATGAGCAGGTGATAACGATTAATATTGATAATGCAGTCACTCTCATTGGTCTCGTCTCAGAAATCTATGAGAAGGCCTTGATGAAACCTACCTTATGTGAAATGTATGCCAATTTCTGTTTCCATCTGGCAGCTGCATTGCCTGATCTTAGTCAAGGCAATGAAAAGATAACTTTTAAGAGATTACTAATAAACAAGTGTCAGGAAGAATTTGAGAGAGGTGAAAGAGAGAAAGAAGAAGATAATAAGGCTGATGAGGGTGAGGTTAAACAGTCTGATGAGGCTAGAATACGCATGTTGGATTTCTGCCCTTCTCCGTTTAACAGCATCGAAAGTTTTTCAATGGATTCTTCTCAACCAGTTGCAATTGCTAAAGAACAATATGGGCGGCTTAATAATGATGGAATTGCTGTTATTGACAGAAGGTACTCTCGAGATTTCCTTTTGAAATTCACACATTTTCCTGAAGGGTTCGAAATCACGTCAGACATAGCCGAGGATTTGATTTTGATGAGTGCTACTGCTAACATTAGTTCTCATCATGTTATTCAATGTTGTTATTCGCATCCTTCTTCTCGAAGAGCTAGGGATCTTCAAGGATGTGATGTTGTTGANGAAGATAGATGGAGTAAAGCTTGTACAAGGCGATCTAGCGGAAGGAAACAGGTGAGGCAGATCTTCCACTTGTTCCATCTCTGGCTTTGGGCGTCACTGCGTTCCGGCACTCGTCCGTGGCACTGCCGAGCTCATGTGTGTGTCCAGACCGCCGTCGCGCAGTTCAGCCACCATCGTTTGCTTGTCGTGGCCAAGGGGAGTGGGAGTGAGGCCAAGAGTTGGAGGACTGTTGGAACTCAAAAAGGGCCATGGAGGGAGAGTGGGACTGGGAGAGAGGAGCGCACAGATGGAGAGGGGCGAAATCTAAGGAACCCTAACGTCATTCGTTCTCTCTCAGTCTCTCTTGCGGTCTTGCGGCTTGCCTTATCTTTGCGTCGTTCCTCTGTCATTGTTGCTCTCAGAGTCGTATTTGTGCTCTGGTCTGGTTCGCTTGTTCTGGTTCTNTCATCTGTGAGACTGCAATCTGCATCTTCAACCTCAATCAGCAGCAAGGATCCCATCTCAATTCTCCTCTGCAAGAGTGCAAGGCGCAAGTGCGCAGCTTTCGGTCTCCTTCCTCGACTCATAGGCTCACAACACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00919	96307	101261	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003723 RNA binding

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000919s00033056.1	PF02854.14	MIF4G	19	118	3.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.718
SRR1783600	control	13.472
SRR1783602	moderate drought stress	23.824
SRR1811619	moderate drought stress	22.911

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.176
DRR006520	Root Summer glycyrrhizin high producing strain	4.980
DRR006521	Root Winter glycyrrhizin high producing strain	7.088
DRR006522	Root Winter glycyrrhizin high producing strain	6.654
DRR006523	Root Summer glycyrrhizin low producing strain	2.872
DRR006524	Root Summer glycyrrhizin low producing strain	2.854
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.204
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.530
SRR2868004	Drought Stress (root)	2.930
SRR2967015	Control (root)	4.180

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.992
SRR9715740	Leaf	3.037
SRR9715741	Leaf	3.549
SRR9715739	Root	9.030
SRR9715742	Root	5.753
SRR9715743	Root	4.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.575
SRR8749028	MeJA induced 9h	0.432
SRR8749029	MeJA induced 9h	0.505
SRR8749030	Uninduced	0.324
SRR8749031	Uninduced	0.180
SRR8749032	Uninduced	0.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.632
SRR8400027	Control - Root	9.644