Gene detail

Gene detail information of Glyur000919s00033055

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60240.4	8.00E-32	eukaryotic translation initiation factor 4G
NR	XP_007140754.1	6.18E-51	hypothetical protein PHAVU_008G139000g [Phaseolus vulgaris]
Swissprot	tr\|Q76E23\|IF4G_ARATH	2.00E-34	Eukaryotic translation initiation factor 4G
trEMBL	tr\|V7B7B8\|V7B7B8_PHAVU	2.00E-51	Uncharacterized protein {ECO:0000313\|EMBL:ESW12748.1}

Sequence

Transcript Sequence

>Glyur000919s00033055.1
ATGGATTCTTCTCAACCAGTTGCAATTGCTAAAGAACAATATGGGCGGCTTAATAATGATGGAATTGCTGTTATTGACAGAAGGTACTCTCGAGATTTCCTTTTGAAATTCACACATTTTCCTGAAGGGTTCGAAATCACGTCAGACATAGCCGAGGATTTGATTTTGATGAGTGCTACTGCTAACATTATGAGACGTGAGATGCAGGAATTGCATTTGAAAGGCGAGCAGCAGCGGCGGCGGCGCGGCGCAATTAGTTTCGGCTTCGGCAATTTTAAGAAGAAGAGGGTCTCTCACCAGATTATTTGTCTGCCCGCATACTCTGATCCCAACAACTGGTTCCTTAGAGATACAATTCAATCTCCTTTACAGATGATGCGCAAAGCTGAGAAGAAGCATGGGTGGGTGATAGCGATTAATATTGATAATGCAGTCACTCTCACTGGTCTCATCTCACAAATCTATGAGAAGGCCTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTCTGTTTCCATCTGGCAGCTGCATTGCCTGATCTTAGTCAAGGCAATGAAAAGATAACTTTTAAGAGATTACTAATAAACAAGTGTCAGGAAGAATTTGAGAGAGGTGAAAGAGAGCAAGAAGAAGATAATAAGGCTGATGAGGCACCGTCAGCAAGCTGTGCCCAACCACAACCAGACACCCTTAGATTGAAAGATGGAGTACGACTTTCATTACCTGTTGTGTGCTACTACTGTCAGTGTTGTGAGCCTATGAGTCGAGGAAGGAGACCGAAAGCTGCGCACTTGCGCCTTGCACTCTTGCAGAGGAGAATTGAGATGGGATCCTTGCTGCTGATTGAGGTTGAAGATGCAGATTGCAACCAGAGCACAAATACGACTCTGAGAGCAACAATGACAGAGGAACGACGCAAAGATAAGGCAAGCCGCAAGACCGCAAGAGAGACTGAGAGAGAACGAATGACGCCATTGTGGCCGCAACGCCGTTTCGTCGCGGCCGTTACGCGTGATTTCCATCACACCGTTACTTCGGTCGTTTTCGGTTTCGGCATCGACCAAAACCATTTTGTCGCGGGCGATACAGGTGATGCGGTCCAATTTTTTAAACCTTGCTTAGTGGTGCTAAGGCTGGACAAGTTGGGCCGAACCGACCAGGACCCGAGGCTGCTTGAACCGAGTTGGGCAGTTCTGGGCGGTTCTGTGCGGTTCTCGGTTTTTCGGGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00919	94307	96951	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003723 RNA binding

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000919s00033055.1	PF02854.14	MIF4G	139	214	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.701
SRR1783600	control	1.924
SRR1783602	moderate drought stress	5.718
SRR1811619	moderate drought stress	5.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.343
DRR006520	Root Summer glycyrrhizin high producing strain	2.255
DRR006521	Root Winter glycyrrhizin high producing strain	1.589
DRR006522	Root Winter glycyrrhizin high producing strain	1.638
DRR006523	Root Summer glycyrrhizin low producing strain	1.344
DRR006524	Root Summer glycyrrhizin low producing strain	1.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.650
SRR2868004	Drought Stress (root)	2.560
SRR2967015	Control (root)	2.503

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.481
SRR9715740	Leaf	0.576
SRR9715741	Leaf	0.792
SRR9715739	Root	0.411
SRR9715742	Root	1.175
SRR9715743	Root	0.966

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.029
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.123
SRR8400027	Control - Root	5.503