Gene detail information of Glyur000919s00033054 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60240.4 | 5.00E-33 | eukaryotic translation initiation factor 4G |
| NR | XP_006573290.1 | 4.57E-81 | PREDICTED: eukaryotic translation initiation factor 4G-like isoform X2 [Glycine max] |
| Swissprot | tr|B9FXV5|IF4G_ORYSJ | 3.00E-36 | Eukaryotic translation initiation factor 4G |
| trEMBL | tr|K7K2V9|K7K2V9_SOYBN | 2.00E-81 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G23598.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00919 | 92547 | 93221 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000919s00033054.1 | PF02854.14 | MIF4G | 2 | 45 | 4.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.767 |
| SRR1783600 | control | 6.647 |
| SRR1783602 | moderate drought stress | 2.962 |
| SRR1811619 | moderate drought stress | 3.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.626 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.672 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.191 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.550 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.376 |
| SRR2868004 | Drought Stress (root) | 14.783 |
| SRR2967015 | Control (root) | 16.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.213 |
| SRR9715740 | Leaf | 2.539 |
| SRR9715741 | Leaf | 3.740 |
| SRR9715739 | Root | 0.687 |
| SRR9715742 | Root | 7.227 |
| SRR9715743 | Root | 6.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.228 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.846 |
| SRR8400027 | Control - Root | 16.468 |