Gene detail

Gene detail information of Glyur000919s00033053

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48450.1	0	SKU5 similar 3
NR	XP_007140706.1	0	hypothetical protein PHAVU_008G134900g [Phaseolus vulgaris]
COG	YP_007054887.1	4.00E-12	CopA family copper-resistance protein [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9SU40\|SKU5_ARATH	0	Monocopper oxidase-like protein SKU5 (Precursor)
trEMBL	tr\|V7B575\|V7B575_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12700.1}

Sequence

Transcript Sequence

>Glyur000919s00033053.1
GAACTGGCAAGTTAACTTCATTCACATTCAATTCACTTCTCTGCACAGAACTTGAGAAGACATACCCAAACAAAATAGTTTCACTGAAGAATACACACGATGCCATCATTATTGTCTTCTTGGTTCTTCTTCATCACAACGCTTCTTCTATGCTTTTTAGATGCAGCTTTTGCGGGTGACCCTTTTGTTTACTATGATTGGACTGTCTCCTACACCACCGCCTCCCCACTTGGTGTCAAACAGAAGGTAATTGGGATCAATGGGAAATTTCCAGGACCAATTCTAAATGTCACAACAAACTGGAATGTGGTTGTCAATGTGAAGAATGATCTTGATGAACCCTTACTTCTAACATGGGATGGTATACAACATAGAAAAAACTCTTGGCAAGATGGAGTTTCAGGAACTAATTGTCCAATTCCAGCCGGTTGGAATTGGACATACCAGTTTCAAGTTAAAGATCAAATAGGGAGTTTTTTCTACTTCCCTTCACTAAACTTCCATAGAGCTGCTGGAGGATATGGAGGAATCATCATAAACAATCGACCTGTTATTCCTGTACCCTTTGGATTGCCGGATGGAGATATTACGATACTTCTGAGTGATTGGTACACCAAGAGTCATAAGGAACTCAGGAAGGATGTGGAAAATAATGTTGACCTTGGAATCCCCGATGGTGTGCTTATTAATGGATTAGGTCCTTATCGCTATGATGACACACTTGTCCCAAATGGCATTTCTTACCAAATAATAAATGTGGAACCAGGGAAAACATACCGCCTACGGGTTCACAATGTTGGAATCTCAACAAGCTTGAATTTTAGGATACAAAATCACAATTTGCTTCTTGTGGAGACTGAAGGATCATACACAGTCCAGCAAAACTACACAAACATGGATATTCACGTCGCTACTGGAGTTGCCATTTTGCACTATTCCAATTCTCAGGGCCCTGCTTCAGGTCCTCTTACCAGTCTTCCTGATCAAGATGATCCTTCTTTCTCTATAAATCAAGCAAGATCAATAAGGTGGAATGTGTCTGCTGGTGCTGCACGTCCAAACCCTCAAGGTTCCTTCAAATATGGTGACATTACTGTGACAGATGTATATGTTATTATTAATAGACCTCCAGAGCTTATAAATGGGAAGTGGCGCACTACCCTTAATGGTATATCGTATTTACCACCTTTGACACCCTTGAAGCTTGCGGAACAATTCAAAATTCTCGGGGTATACAAGCTTGATTTTCCAAATAGATTGATGAACAGACCTCCAAAAGTTGATACCTCTCTCATTAATGGCACTTACAGAGGTTTTGTGGAAATAATCTTTCAAAACAATGACACCACTGTCCAGACGTACCATCTGGATGGCTTTGCATTCTTTGTTGTTGGCATGGATTTTGGAGTATGGACAGAAAATAGCAGAAGTACTTATAATAAGTGGGATGGTGTGGCTCGCTGCACTACACAGGTCTTTCCTGGGGCTTGGACAGCCATTTTAGTATCTCTTGACAATGCTGGCATTTGGAACCTTCGTGCGGAGAACCTCAACTCTTGGTATCTGGGCCAAGAAGTTTATCTGCAAGTTGTAAACCCAGAGAAAGATAGAGATAGTGATGAGAATTCTTTGCCTGAAAATGCAATATACTGTGGCCTACTTTCCTCCCTTCAAAAGGACCAGTCTCACAAATTCCAGTTCTCTTTGGGATCACCTTTCTGCAGTAATTCTAGAATGATATTATTCATGTTACTATTCCTTGCTCTACTTGAAAGTTTATGTGGTATGTTGAGGGTTGAACTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00919	82578	88791	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000919s00033053.1	PF07732.10	Cu-oxidase_3	36	149	6.00E-39
Glyur000919s00033053.1	PF00394.17	Cu-oxidase	162	277	8.90E-30
Glyur000919s00033053.1	PF07731.9	Cu-oxidase_2	366	501	7.00E-29
Glyur000919s00033053.2	PF07732.10	Cu-oxidase_3	36	149	6.60E-39
Glyur000919s00033053.2	PF00394.17	Cu-oxidase	162	314	6.30E-43
Glyur000919s00033053.2	PF07731.9	Cu-oxidase_2	399	534	7.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.550
SRR1783600	control	5.451
SRR1783602	moderate drought stress	4.762
SRR1811619	moderate drought stress	4.714

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.578
DRR006520	Root Summer glycyrrhizin high producing strain	9.568
DRR006521	Root Winter glycyrrhizin high producing strain	2.506
DRR006522	Root Winter glycyrrhizin high producing strain	2.292
DRR006523	Root Summer glycyrrhizin low producing strain	12.022
DRR006524	Root Summer glycyrrhizin low producing strain	12.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.376
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.395

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.883
SRR2868004	Drought Stress (root)	5.355
SRR2967015	Control (root)	5.893

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.475
SRR9715740	Leaf	0.509
SRR9715741	Leaf	1.360
SRR9715739	Root	0.883
SRR9715742	Root	2.018
SRR9715743	Root	2.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.988
SRR8749028	MeJA induced 9h	3.332
SRR8749029	MeJA induced 9h	2.942
SRR8749030	Uninduced	1.160
SRR8749031	Uninduced	0.530
SRR8749032	Uninduced	0.536

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.528
SRR8400027	Control - Root	13.375