Gene detail information of Glyur000918s00025558 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58370.2 | 9.00E-125 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_006591254.1 | 0 | PREDICTED: DNA ligase 1-like [Glycine max] |
| COG | YP_003855817.1 | 2.00E-48 | GTP-binding protein [Parvularcula bermudensis HTCC2503] |
| Swissprot | tr|O81004|Y2287_ARATH | 2.00E-21 | GTP-binding protein At2g22870 |
| trEMBL | tr|I1LLV7|I1LLV7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G30090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00918 | 101421 | 105369 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000918s00025558.1 | PF01926.18 | MMR_HSR1 | 373 | 491 | 6.30E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.019 |
| SRR1783600 | control | 6.093 |
| SRR1783602 | moderate drought stress | 5.894 |
| SRR1811619 | moderate drought stress | 5.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.733 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.990 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.873 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.038 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.725 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.010 |
| SRR2868004 | Drought Stress (root) | 11.489 |
| SRR2967015 | Control (root) | 11.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.799 |
| SRR9715740 | Leaf | 5.846 |
| SRR9715741 | Leaf | 5.159 |
| SRR9715739 | Root | 0.459 |
| SRR9715742 | Root | 3.060 |
| SRR9715743 | Root | 3.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.662 |
| SRR8749028 | MeJA induced 9h | 6.068 |
| SRR8749029 | MeJA induced 9h | 2.688 |
| SRR8749030 | Uninduced | 1.659 |
| SRR8749031 | Uninduced | 0.349 |
| SRR8749032 | Uninduced | 0.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.430 |
| SRR8400027 | Control - Root | 11.154 |