Gene detail

Gene detail information of Glyur000918s00025548

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05340.1	7.00E-114	Peroxidase superfamily protein
NR	KEH34419.1	0	anionic peroxidase swpb3 protein [Medicago truncatula]
Swissprot	tr\|A7NY33\|PER4_VITVI	8.00E-164	Peroxidase 4 {ECO:0000250\|UniProtKB:Q42578} (Precursor)
trEMBL	tr\|A0A072UXA0\|A0A072UXA0_MEDTR	0	Anionic peroxidase swpb3 protein {ECO:0000313\|EMBL:KEH34419.1}

Sequence

Transcript Sequence

>Glyur000918s00025548.1
CATCAACATCATCTTCTATTGCTTCACTAGAAAAAAATGGCACACCAATATCCTTCTCGTACTTACCATTCTTTCTCTTCTTCATCATCATCATCATCAACCAATGTTGTTATATTGGGTTTGTTCCTGCTTCTAATTACAGGGACCACTTCGGCTCACCAACTCTATGAGAACTTCTATTCTGAGAAATGTCCAAAGGTTTTTNACACCGTGAAATCTGTTGTTAAATCTGCTGTGGCCAAAGAGCGTCGCATAGGAGCATCTATCCTTCGCCTCTTCTTCCATGACTGCTTTGTTGATGGGTGTGATGGGTCATTACTACTTGATGACACTTCATCCTTCAGGGGAGAGAAAACTGCAGCTGCCAACAACAATTCCGTGAGAGGTTTTGAAGTAATTGATGCCATCAAGTCTAAGGTGGAAGCAATATGCCCCGGTGTTGTGTCCTGTGCTGATATCTTGGCCATTGCTTCTCGTGACTCTGTTGTCATTCTTGGAGGGCCATTTTGGAAGGTAAAACTTGGAAGGAGGGATTCGAGAACAGCCAACTTCACTGCAGCAAACACAGGTGTGATTCCACCTCCCACTTCTAACCTCACCAACCTTATCTCCACGTTTCGAGCTCAGGGGCTTTCTGTCAAGGACATGGTTGCCTTATCTGGAGCTCACACAATTGGGAAAGCAAGGTGCACTAGTTTCAGAAGTCGCATATACAATGAAAGCAACATTGACAGTACATTTGCCAAGGCAAGGCAGAGGAACTGTCCAAGGACAAGTGGCTCAGGAGACAACAATCTAGCAAACCTAGACTTCAGAACCCCTACTCATTTTGACAACAACTACTACAAGAACCTCATCATCAAAAGGGGCCTCCTCCATTCTGATCAGGTTCTCCTCAACGGTGGTGGATCTACTGATTCACTTGTTAGAACTTACAGCAAGAATGATGAGGCCTTCAATTCTGACTTTGTTACTGCAATGATTAGGATGGGAAATAACAAGCCCTTAACTGGGAAACATGGGGAGATTAGGAAGAACTGCAGGAGAGTGAATTAGAAAAAGAGACACATAATTCTATCATGTTGTAAATTAAGTTGTACGNAGTATCTTCCAAAAGTGGGGGAAGTAATTAATGTTTGGTGGAACGCTCTAGCTGTTCCACGTGGCTTGGAAATTAATTCTGAATTGTTTGNTCAGTTCAAGTTAATTTGTACTGATGTAATTGTGTCACTGTATGAAATAAATTATGAGGTGTGTTGCTTTATGTAATGTACCAAGTGGAACGCACCTTTGGTTTGCATTTGCAGAATTGCAGTCTGTCAGATGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00918	54179	56945	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000918s00025548.1	PF00141.18	peroxidase	59	303	1.70E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.175
SRR1783600	control	0.221
SRR1783602	moderate drought stress	0.085
SRR1811619	moderate drought stress	0.114

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.183
DRR006520	Root Summer glycyrrhizin high producing strain	1.132
DRR006521	Root Winter glycyrrhizin high producing strain	0.084
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.760
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.586

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.425
SRR2868004	Drought Stress (root)	1.776
SRR2967015	Control (root)	2.108

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.297
SRR9715740	Leaf	11.671
SRR9715741	Leaf	15.942
SRR9715739	Root	0.261
SRR9715742	Root	2.894
SRR9715743	Root	1.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.054
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.115
SRR8749032	Uninduced	0.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.913
SRR8400027	Control - Root	3.409