Gene detail

Gene detail information of Glyur000918s00025544.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05340.1	3.00E-94	Peroxidase superfamily protein
NR	XP_009369619.1	0	PREDICTED: cationic peroxidase 1-like [Pyrus x bretschneideri]
Swissprot	tr\|A7NY33\|PER4_VITVI	3.00E-117	Peroxidase 4 {ECO:0000250\|UniProtKB:Q42578} (Precursor)
trEMBL	tr\|A0A061GYX9\|A0A061GYX9_THECC	0	Peroxidase 68 {ECO:0000313\|EMBL:EOY34663.1}

Sequence

Transcript Sequence

>Glyur000918s00025544.1
GCCACATCGATTATCCCAATCAATGCTCAGCTTACTAGTCGTTACTATCAGAAGGTTTGCCCCCATTTGTTGCCCCTCGTAAGGTCAGCTGTTGGACTGGCAATCGATCGTGAACCACGCATGGGAGCATCTTTGCTGCGTTTGCATTTCCATGATTGCTTTGTTAATGGGTGTGATGGATCGGTTTTGCTTGACGACACCAGTAACTTCACTGGCGAGAAGAATGCAACCCCAAATAAGGATTCGCTNAGAGGTTTTGAAGTGGTCGATGAGATCAAAGCAGCGGTAGANAAAGCTTGTCCAAGCCATGTGGTGTCATGTGCTGATATCCTAGCCATCGCTGCTCGTGATTCTGTAGCCATTTTGGGGGGTCCATCTCTTGAGTACGAGGTGTTACTGGGCAGAAGAGACGCNACAACTACGAGCCAGGAAGCTGCAAACACCAATCTTCCACTGGCAAGTGCCAGCTTCTCGGAGCTTCTTTCAAATTTCCAATCTCACGGGTTGGATCTCAAGGACTTGGTGGCACTCTCTGGTGGCCACACCATTGGGTTTGCAAGGTGTTCTAGCTTCAGGGACAGGATCTACAATGACACCAACATAGACCCAAACTTTGCAGCCTCAATGCAGAAAATATGCCCCCAAAGTGGTTCCAATGACAATTTGGCACCATTTGATTCCACATCAAGAACAGTGGACACCGCATATTACTATGGGTTGCTGCAGAGGAAGGGACTCCTGCATTCTGATCAAGAGCTCTTCAAGGGATCGGGTTGTGAGAGTGACAACTTCATAAGAGCACACTTAATTAACACAATGGTTTCTCACCTTCAATCTTTATGGCTTGTGCTTGTTATGGTCATTTTGGCCACATCAATGATCCCTTCCCACGCAAAGCTCACTCCTCATTTCTATAAGAAAGTTTGTCCCCAGGCACTTCCAGTCATAAGATCAGTCGTTCAGCAAGCAATTATTCGTGAACGGCGCATGGGAGCATCCTTGTTGCGTTTGCATTTCCATGATTGCTTTGTTAATGGCTGTGATGGGTCGGTTCTACTAGATGACACCAGGAACTTCACTGGCGAGAAGACTGCCCTTCCAAATTTTCATTCATTAAGAGGTTTCAATGTGGTTGATGAGATTAAAGCAGCTGTTGACACAGCTTGCAAAGGACATGTAGCGTCATGTGCAGATATCTTAGCCATAGCTGCTCGTGATTCTGTAGCCATATTGGGGGGTCCACACCTTTGGTACAAAGTGTTACTAGGAAGAAGAGATGCAAGAACTGCAAGCAAGGATGCTGCAAACNCCAACCTTCCCGCAGCATTTCTGAGCTTCTCACAGCTTCTCTCAAACTTCAANGCTCACGGATTGGGCCTCAGAGACCTAGTGGCACTCTCTGGTGGCCACACCCTTGGCTTTGCTAGGTGTACTAACTTCAGGGACCGAATCTACAATGACACCAACATAGATCACAATTTTGCAGCCTCTTTGAAGAAAACATGCCCTCCAATTAGTGGAGGAAAAGATAGCAACTTGGCGCCATTGGATTCATCTCCTGCAGTGTTTGACACTGTGTATTACAGGGAATTGATGTGCAAAAAGGGTCTCCTGCATTCTGATCAAGAGCTCTTCAAGGGGAATGGAAGTGAAAGTGACAGATTGGTAGAGCTATACAGCATGAACCCATTTGCTTTTGCTAAAGACTTTAAAGTTTCTNTGATCAAGATGGGTAACATTAAACCTCTTACTGGGAACAGGGGAGAGATCAGACGCAATTGCAGAAAAGCATTGCCAATCATTAAGTCAATTGTTCAGCGTGCAATTACCCATGAACCACGCATGGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGTTTTGTCAACGGCTGTGATGGATCGGTTCTCCTGGATGATACCCCAAACTTCATAGGTGAGAAGACCGCCGTCCCAAATATTGGCTCAATTCGAGGTTTTGAGGTGATTGATGAAATTAAAGAAGCTGTTGACAAAGCTTGCAAACGCCCTGTGGTATCATGTGCAGATATCTTAGCCATAGCCGCTCGTGACTCTGTATCCATTTATTGGTACAAAGTGTTACTAGGCAGAAGAGATGCTACAAATGCAAGCAAGGATGCTGTAATCTCCAATCTTCCTGCCCCATCTTTCAACTTCTCTCAGCTTCTTTCTAATTTTCAGTCTCATGGGCTGAACCTTAAAGATCTCGTAGCTCTCTCTGGTGCTCACACCATTGGATTGGCTCACTGTTCTACCTTTAGGAACAGGATCTACAATGACACCAACATAGACCCCAACTTTGCTTCCACTCTGCAGAGGAGGTGCCCTGCAACTGCAACTGGTGGAGATAACANCAACTTATTAGCAGCATTGGATGCCACTCCTTCAAGAGTTGACACAGCATATTACACNGCTTTGCTGAGTAAAAAGGGTCTCCTACATTCTGATCAAGAGCTCTTCAAGGNAGATGGNTGTGAAGGTGACACATTGGTTCAGCTCTACAGCAAAAATCCCTTTGCTTTTGCTAGAGACTTTAAAGCTTCCATGATCAAGATGGGTAACATTAAGCCTGATCTTGGAACTGGAAATGATGAGGGAGAGATCAGAATCAACTGTAGGAAAGTCAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00918	32040	42467	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00430	E1.11.1.7	EC:1.11.1.7	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000918s00025544.1	PF00141.18	peroxidase	28	258	8.80E-70
Glyur000918s00025544.1	PF00141.18	peroxidase	317	560	9.10E-69
Glyur000918s00025544.1	PF00141.18	peroxidase	602	839	1.50E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.014
SRR1783600	control	0.012
SRR1783602	moderate drought stress	0.010
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.041
DRR006520	Root Summer glycyrrhizin high producing strain	0.040
DRR006521	Root Winter glycyrrhizin high producing strain	0.077
DRR006522	Root Winter glycyrrhizin high producing strain	0.075
DRR006523	Root Summer glycyrrhizin low producing strain	0.042
DRR006524	Root Summer glycyrrhizin low producing strain	0.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.449
SRR2868004	Drought Stress (root)	2.573
SRR2967015	Control (root)	0.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.012
SRR9715742	Root	0.057
SRR9715743	Root	0.044

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.159
SRR8749028	MeJA induced 9h	0.110
SRR8749029	MeJA induced 9h	0.279
SRR8749030	Uninduced	0.281
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.162

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.622
SRR8400027	Control - Root	1.389