Gene detail

Gene detail information of Glyur000917s00030719

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	1.00E-86	disease resistance family protein / LRR family protein
NR	XP_006600020.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]
COG	YP_004775215.1	1.00E-35	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	8.00E-82	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K7MHW4\|K7MHW4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29060.2}

Sequence

Transcript Sequence

>Glyur000917s00030719.1
ATGAATTCTCTTGAGCGGCTTGACCTCTCCTATAATAGACTCAAGGGTGGGGTTTCGAAATCCTTCATGAATATATGCACCTTACGTGCTTTAAATATGAAAGAAAACAATTTGACTAAAGACCTTCCCTCTATTCTTCGTAATTTGTCTGGTGGCTGCGTTAAAAACTCGCTACAAGAGTTGGATTTGAGTTCTAATAAAATCACTGGCTCTTTACCTGACCTTTCCATGTTCTCATCTCTGAAAACATTGGATCTTTCCTACAATCAATTAAGTGGAAAGATACCAGAAGGTAGCAGTCTGCCGTTTCAGTTGGAGGATTTGTCAATCTATTCAAACTCTTTAGTAGGGGGAATTCCAAAATCGTTTGGGAATGCATGTAAATTGCATTCTTTAAGGATGGAGAAAAACAATTTGACTGAAGACCTTCCCTCTATTCTTCGTAATTTGTCTGGTGGCTGCGTTAGAAACTCACTACAAGAGTTGGATCTGAGTTCTAATAAAATCACTGGCTCTTTACCTGACCTTTCCATGTTCTCATATCTGAAAACATTGGATCTTTCTCGCAATCAATTAAGTGGAAAGATACCAGAAGGTAGCAGCCTGCCGTCTCAGTTGGAGCATTTGTCAATCGAATCAAACTCTTTAGTAGGGGGAATTCCAAAATCGTTTGGGAATGCATGTGCATTGCGCTCATTGTATCTGTCCAATAACACTTTAAGTGACGAGCTTCCAGTGATAATCCATCACTTGTCGGGATGTGCTAGATACTCACTACAGGAATTAGATCTAAGAATGAATCAAATCAATGGCACACTACCTGACCTCTCAATATTCTCATCTTTAAAAATATTATATCTTTCTGAAAATAGGCTAAATGGGAAGATACCTCAAGATATTCGATTTCCAACTCAACTGGTGGAACTGCTTATGTTTTCAAACTCTTTGGATGGTGTGATCTCTGACTCACATTTTGCTAATATGTCCAAGTTAGAGTCATTGGACTTGTCTGACAACTCACTGGTTTTGACATTTACCCAAAATTGGGTCCCACCTTTTAAATTGCGCGAAATTGGATTGAGGTCCTGCAAACTTGATCTTGCATTTCCGAAATGGTTGCAAACACAAGACAACTTTCAATCCCTTGACATTTCTAATGCTGGAATATCGGATATTGTTCCAGAGTGGTTTTGGGCCAAACTAGCATTCCAAGAGTGGGATAGAGTCAATATTTCACAGAACAATCTCAAAGGCATAATTCCGAATTTTTCATCACCAGTAAAGAATCCTCAACNTTATTCTTTATCTCTCGCATCAAATCAATTTGAAGGCCCTATTCCACCATTTCTACGAGCGGGTGGTGTGGCTCTTGATCTATCCAAAAATAAATTTTCAGACTCTCTTTCATTTTTATGTGCGAGTGGTATAGATGAAACATTGTACCAACTAGACCTCTCAAATAACTGGTTGAACGGACAAATTCCAAATTGTTGGAGCCATCACAACTCATTAGCTTATTTAGATTTGAGTCACAATAATTTTTCAGGGAAGATTCCTACTTCAATGGGATCACTCGTAGAACTTCAAGCATTACTATTGAGAAACAACAGCTTAACGGGGGAGATCCCTTTCTCCTTGATGAATTGCACAAAGCTAGTAATGTTGGATACGGGAGAAAATAGATTATCTGGACTCATCCCTTCATGGATTGGGAGTAAATTACAAGAGTTACAAGTTTTAAGCTTAGGAAGGAATCACTTCTTCGGAAGCTTACCTTTAGAACTTTGTTATCTGAAAAGCATTCAAGTCTTGGATCTCTCATTGAACAATCTATCTGGACAGATCCCCAAATGCATCAAAAATTTTACTTCAATGGCTCAAAAGACTTCCTCAATAGATTATCGAAGCAATCATTCATATTTTGTCAACATGAGTAATTATGCTATGCGAAGAATTTGGTCTTACGATTTGAATGCATTCTTGATGTGGAAAGGGGTAGAGCAAATTTTCAGCGATAGTGAGTTACCGCTTTTAAAAACCATTGATCTCTCCGGCAATCACTTCTCAAAGGAAGTTCCAGTGGAAATAGAGCATTTATTTGAATTGGTTTCTTTGAACTTATCAAGAAACAATTTAACGGGGAAAATTCCTTCAAATATTGGAAAGCTAAGATCCCTTGATTCTCTTGATTTGTCAAGAAACCAGTTGATTGGTTCAATTCCTTCAAGTCTTACTGAAATTTATGGGATTGGTGTGTTAGATTTGTCACATAATCATTTATCTGGAAAAATTCCAACTAGCACACAGTTACAAAGTTTCAATGCCTCAAGTTATGAAGATAATCTTGATCTTTGTGGGCCACCACTTGAGAAATTGTGTGTTGAAGTGGAGCCACCACATGACCCAAAAGTTAAGATTCAGGAGGATGAGGATTTGCTTATCACTCGAGGATTTTACTTCAGTATGGCGTTTGGATTTGTTATTGGCTTCTGGGGGTCTTTGGCTCAATCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00917	103116	105629	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000917s00030719.1	PF00560.28	LRR_1	3	22	0.89
Glyur000917s00030719.1	PF12799.2	LRR_4	57	92	7.50E-08
Glyur000917s00030719.1	PF12799.2	LRR_4	158	193	7.60E-07
Glyur000917s00030719.1	PF00560.28	LRR_1	230	247	0.49
Glyur000917s00030719.1	PF13855.1	LRR_8	479	538	2.60E-06
Glyur000917s00030719.1	PF13516.1	LRR_6	598	619	0.87
Glyur000917s00030719.1	PF00560.28	LRR_1	678	699	0.38
Glyur000917s00030719.1	PF00560.28	LRR_1	702	723	0.032
Glyur000917s00030719.1	PF00560.28	LRR_1	725	744	0.96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.042
SRR1783600	control	0.066
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.101
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.011
DRR006522	Root Winter glycyrrhizin high producing strain	0.022
DRR006523	Root Summer glycyrrhizin low producing strain	0.098
DRR006524	Root Summer glycyrrhizin low producing strain	0.110
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.809
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.910

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.114
SRR2868004	Drought Stress (root)	0.189
SRR2967015	Control (root)	0.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.230
SRR9715740	Leaf	2.126
SRR9715741	Leaf	1.680
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.415
SRR8749028	MeJA induced 9h	0.387
SRR8749029	MeJA induced 9h	0.279
SRR8749030	Uninduced	0.010
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.016
SRR8400027	Control - Root	0.005