Gene detail information of Glyur000917s00030707 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23420.2 | 2.00E-23 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_002270104.1 | 1.58E-31 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera] |
| COG | YP_005005532.1 | 6.00E-12 | short chain dehydrogenase family protein [Pediococcus claussenii ATCC BAA-344] |
| Swissprot | tr|A2RVM0|TIC32_ARATH | 8.00E-27 | Short-chain dehydrogenase TIC 32, chloroplastic |
| trEMBL | tr|M1A4X4|M1A4X4_SOLTU | 6.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400014810} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00917 | 24907 | 29239 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.113 |
| SRR1783600 | control | 1.162 |
| SRR1783602 | moderate drought stress | 2.981 |
| SRR1811619 | moderate drought stress | 3.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.230 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.444 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.495 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.705 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.116 |
| SRR2868004 | Drought Stress (root) | 1.348 |
| SRR2967015 | Control (root) | 2.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.011 |
| SRR9715740 | Leaf | 1.020 |
| SRR9715741 | Leaf | 1.301 |
| SRR9715739 | Root | 0.079 |
| SRR9715742 | Root | 1.328 |
| SRR9715743 | Root | 1.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.083 |
| SRR8749028 | MeJA induced 9h | 1.470 |
| SRR8749029 | MeJA induced 9h | 0.761 |
| SRR8749030 | Uninduced | 0.580 |
| SRR8749031 | Uninduced | 0.894 |
| SRR8749032 | Uninduced | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.840 |
| SRR8400027 | Control - Root | 3.151 |