Gene detail information of Glyur000916s00027863.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16230.1 | 9.00E-15 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_004499143.1 | 6.05E-21 | PREDICTED: glucan endo-1,3-beta-glucosidase 7-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q94G86|ALL9_OLEEU | 3.00E-17 | Glucan endo-1,3-beta-D-glucosidase (Precursor) |
| trEMBL | tr|A0A072VE71|A0A072VE71_MEDTR | 2.00E-21 | Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313|EMBL:KEH40122.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00916 | 98949 | 99273 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000916s00027863.1 | PF00332.13 | Glyco_hydro_17 | 3 | 47 | 6.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.727 |
| SRR1783600 | control | 21.075 |
| SRR1783602 | moderate drought stress | 16.588 |
| SRR1811619 | moderate drought stress | 16.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.077 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.515 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.844 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.027 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.812 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.161 |
| SRR2868004 | Drought Stress (root) | 47.224 |
| SRR2967015 | Control (root) | 33.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.616 |
| SRR9715740 | Leaf | 2.861 |
| SRR9715741 | Leaf | 4.060 |
| SRR9715739 | Root | 8.066 |
| SRR9715742 | Root | 30.116 |
| SRR9715743 | Root | 29.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.083 |
| SRR8749028 | MeJA induced 9h | 0.067 |
| SRR8749029 | MeJA induced 9h | 0.061 |
| SRR8749030 | Uninduced | 0.351 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.880 |
| SRR8400027 | Control - Root | 9.577 |