Gene detail information of Glyur000916s00027862 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16230.1 | 8.00E-89 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_004499143.1 | 2.11E-145 | PREDICTED: glucan endo-1,3-beta-glucosidase 7-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9M069|E137_ARATH | 5.00E-107 | Glucan endo-1,3-beta-glucosidase 7 (Precursor) |
| trEMBL | tr|K7M5G2|K7M5G2_SOYBN | 1.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G08200.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00916 | 87978 | 89292 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000916s00027862.1 | PF00332.13 | Glyco_hydro_17 | 30 | 252 | 1.00E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.273 |
| SRR1783600 | control | 57.216 |
| SRR1783602 | moderate drought stress | 48.687 |
| SRR1811619 | moderate drought stress | 47.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 85.880 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 83.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.989 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.723 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.215 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.836 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 101.527 |
| SRR2868004 | Drought Stress (root) | 102.420 |
| SRR2967015 | Control (root) | 77.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.185 |
| SRR9715740 | Leaf | 9.324 |
| SRR9715741 | Leaf | 10.103 |
| SRR9715739 | Root | 38.406 |
| SRR9715742 | Root | 99.048 |
| SRR9715743 | Root | 93.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.079 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.149 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.575 |
| SRR8400027 | Control - Root | 48.672 |