Gene detail information of Glyur000916s00027861


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G49010.39.00E-97breast basic conserved 1
NRXP_003522855.18.37E-141PREDICTED: 60S ribosomal protein L13-1-like isoform X1 [Glycine max]
Swissprottr|P41128|RL131_BRANA5.00E-12860S ribosomal protein L13-1
trEMBLtr|I1JVU2|I1JVU2_SOYBN3.00E-14160S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold009167891681090-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000916s00027861.1PF01294.13Ribosomal_L13e61842.00E-92
Glyur000916s00027861.2PF01294.13Ribosomal_L13e61842.00E-92


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control220.504
SRR1783600control220.340
SRR1783602moderate drought stress288.598
SRR1811619moderate drought stress285.038

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain463.794
DRR006520Root Summer glycyrrhizin high producing strain458.240
DRR006521Root Winter glycyrrhizin high producing strain253.298
DRR006522Root Winter glycyrrhizin high producing strain246.292
DRR006523Root Summer glycyrrhizin low producing strain438.476
DRR006524Root Summer glycyrrhizin low producing strain439.619
DRR006525Leaf Summer glycyrrhizin high producing strain139.712
DRR006526Leaf Summer glycyrrhizin high producing strain137.963

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)545.916
SRR2868004Drought Stress (root)344.247
SRR2967015Control (root)327.624

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf245.874
SRR9715740Leaf230.313
SRR9715741Leaf209.329
SRR9715739Root188.412
SRR9715742Root244.473
SRR9715743Root236.212

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h992.118
SRR8749028MeJA induced 9h348.247
SRR8749029MeJA induced 9h687.112
SRR8749030Uninduced96.415
SRR8749031Uninduced79.800
SRR8749032Uninduced158.811

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root387.900
SRR8400027Control - Root332.831

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved