Gene detail

Gene detail information of Glyur000916s00027854

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75200.1	0	flavodoxin family protein / radical SAM domain-containing protein
NR	XP_004499150.1	0	PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog isoform X1 [Cicer arietinum]
COG	YP_003482849.1	2.00E-69	Wyosine base formation domain protein [Aciduliprofundum boonei T469]
Swissprot	tr\|Q8RXN5\|TYW1_ARATH	0	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
trEMBL	tr\|A0A067L1Y3\|A0A067L1Y3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP38500.1}

Sequence

Transcript Sequence

>Glyur000916s00027854.1
ATCATTTTGAAGAAGAGCACTTGGGCGACCCATGCTGAACTGAACTGAACTGAACTGAAGCCGCCAGGCAATAGAGCAAAAGACATCGGGCCCGCAACTTCAAACGACGGCCCATTAAATTTAAACGCCACAGAGGGAGGAGCCGAAGGTCTTCATGTTATCCTCAGACGGCGTTAGCCACCGCGAGCCGATGCACCCTTCACTGCATCACTCCCATTACTGAATCATCATCAACGCATAGTTAGTTACTAGCCACTATCACTACACAAGCAAAAAATCTCCATTCTCCAATGTCGTCGTTATCTTCAGTCCCNGCTCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTACTTCCTCTACAAATCTCGCCGCCTAAGACACCTCAAACTCAAACTCTCCCCTAACCCTAACCCTAACCCTAAACCCACTCTCCCGAAGATCGTCTTCCTTTCCGAAACCGGAACCTCCAAATCCCTCGCTCACCGTCTCCACCGCTTCCTAGCCTCAAACGACGTCGCATTCGACCTCGTCGACGCNCAACACTACGAGCCCGAAGACCTCCCCAAGGAAACGCTCCTCCTCTTCGTNGCCTCCACCTGGGAAAACGGTCAACCACCGACTAATTCCCGGTTCCTCGCCACGTGGCTCGCCGAGAGCTCCGAAGACTTCAGGGTCGGTTCGTTGCTTCTCTCGCGGTGCAGGTTCGCCGTATTCGGCGTCGGTAGCCGAGCCTATGGCGATTCCTTCGATGCCGTTGCAAGGGATCTCGTTAAGCAGATGAGGGCGCTGGGCGCCACCGAGATGATCCCTCTATCGGAATTGGACGTTGATGGTGATGACGTGGATCGGGTTTTCGATCAGTGGTGTGAGAAGGTGGTTGGGTTATTGAAAGGTGGTGGTGGTGGTTTGGAGAATGGGGATGATACTGCTGCTGGGAATGATGGTGAATGTGGTGTATTGAGTTCTGAAGAGGATTCTGATTTCGAGGGAGAGTCGGAGATTGTTGATCTTGAAGACATTGCTGGTAAAGCTCCTTCGAGGAATTCCGTGGCTAAGGTGGAGGAGACTAATGGGAAGTTGAATGGGAAGAAAGAAATGGTGACTCCTGCGCTTAGAGCAAATTTGCAGAAGCAGGGATATAAAATTATTGGTTCACATAGTGGTGTCAAGATTTGTAGATGGACCAAGTCACAGCTTCGAGGTCGAGGTGGGTGCTACAAGCACTCATTTTATGGAATCGAGAGTCATAGGTGCATGGAGGCAACTCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGCAAAAGTTGGCAGTGGAAGATGGATGATCCAATAGAGATAGTAAATTCTGCAATAGACCAGCATTCGAATATGATTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAGGGCCTCTCACCCCGGCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCATAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCAGAGAAAATTAAGTCGCTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCTGCGACAAAGGACTCTTTAAAGGCGATCGATAGACCTCTCTTTGGAGATTTCTGGGAACGATTCATTGATTCCTTGACTTCTCTGAAGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGATGGAATACGGAAGAAGTTGATGCTTATTATAAGCTCTTTAGTATAGGAGAACCTGACTTTATTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCGCTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATGCTGATGTGAAAGCATTCTCAGAGGCCCTGGCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTTCACTCATGTTGTGTCCTCTTAGCAAAGACTAAGAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTACGAGAAATTNCATGATCTGGTGGCTTCTGGAAGAACTTTTGACAGCAAAGATTACATGGCTGCCACGCCATCATGGGCCATCTATGGATCTGAGGAAGGTGGATTTGATCCTGGACAATTGAGATATAGGAAAGAGAGACATCATAAGTCCAGCCGCAATCAATCAGGTTAGAAATCTAGGAGCAGTGGACAGCCAATATCCATTTCCCCCTTTATCTTTTTCTTTCATGTATAACTCAATAGGTTATACGACATATTTCAATAGGATAGTTTTGTAATACAATGCTTTTATACATAGGTTAAACCATTTCGGTGTATTTAAGCCCCAATGTTTTCCCAGTTCAAGGAAATTGAAGAGATCATTTTATTTTATTTATCTTATTTAATTTACCACACAAATGACCTTGGTTGTCAATGTTGTAGTTGCAGAATATAGAGATTATTCTTGCAGCAATTTGTTTTTGAAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00916	42565	47160	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0005506 iron ion binding

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000916s00027854.1	PF00258.20	Flavodoxin_1	53	194	4.80E-24
Glyur000916s00027854.1	PF04055.16	Radical_SAM	329	508	8.30E-27
Glyur000916s00027854.1	PF08608.7	Wyosine_form	512	575	5.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.052
SRR1783600	control	21.783
SRR1783602	moderate drought stress	17.340
SRR1811619	moderate drought stress	17.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.586
DRR006520	Root Summer glycyrrhizin high producing strain	12.325
DRR006521	Root Winter glycyrrhizin high producing strain	10.968
DRR006522	Root Winter glycyrrhizin high producing strain	11.079
DRR006523	Root Summer glycyrrhizin low producing strain	10.820
DRR006524	Root Summer glycyrrhizin low producing strain	11.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.881
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.671

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.110
SRR2868004	Drought Stress (root)	21.447
SRR2967015	Control (root)	22.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.652
SRR9715740	Leaf	9.370
SRR9715741	Leaf	8.490
SRR9715739	Root	11.721
SRR9715742	Root	20.530
SRR9715743	Root	18.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.269
SRR8749028	MeJA induced 9h	30.394
SRR8749029	MeJA induced 9h	32.217
SRR8749030	Uninduced	14.711
SRR8749031	Uninduced	9.737
SRR8749032	Uninduced	13.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.681
SRR8400027	Control - Root	18.436