Gene detail

Gene detail information of Glyur000916s00027850

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16250.1	5.00E-180	Leucine-rich repeat protein kinase family protein
NR	XP_004499157.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-35	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|A0A072VFB5\|A0A072VFB5_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH40143.1}

Sequence

Transcript Sequence

>Glyur000916s00027850.1
CTCTCTGCTTGCCCTAATTGCGACGTGACTTGGGTTCAACTGAACTATTCTATTGGTAGATTATATGTAAATTTTATTATAAATCCTCATTGAGATTGATGGTTCTCCCTAACCTTGCATGAGGTGTATCTCCCTTTATCTATTTTTTTTTTTTATCAAAAAAATCAATCATCATCCATCACCCCTTTCCTATCTTCTGCAGCACAAACCAAAAGAGAAAAGAAAAAAAAAATATAATTTGAAAAAGCCACTCTAATTCCAGCCTCCAGGAAACTTCAACTATCAATTTCATTTGCAGTTGATTCTCAATTCATGCTTATAAAAACAAAGACTCAATAGCCACAAGGTCCTGTTTCACCAAAAAAATAAATAGCCACAAGGTCCTTATAACTACCATTTAACAGACACCCAGTTTTGAATTGTTTTTCAGAGAACACTTGAACAACAACAACAACAACAACACTGTTCTTCAATCTTCACCACCACCTCTTTCTCCCAATTCCCCCAAAACGCATTAATAACTCCGGTGAGTTTTGAAAGTGAGAGTTGTGGCAGTTGGGGCATAGCATTGCAACTCGTTTCCCTCATTAATGCACTCCTTCAATCCTACCCATTCTCTTCATACCCATTTAATGTTTTGTTACTCTTAACACAGATTTCACTTCACTTCCCAAAAAAAAATATCATCTTTTTTTGTCATGTAATGTAAAACACACACCCACCCACAACATTCCACACTCCATCCTTTCCTTACATTACACACAAACCTTAAAACCGTGTTTCATGAAGACGACTCATGCAAACAACAACAACAAAAAAACCCAAAAACAAAAACAACAGAGACATTCCTCTAAAATTATAAAACTTTAAATGGGTCCTTCTTGTAGATTGAGTCAGAGTTCACAAGAGACAACAACAGAGCAACACCAAGTGCAGTTTAAGAACTTGTCATCATTGAAGATGAAACTGAAGTGGGGTTTGTGAGAGAGTTAGTGATGGGAGTGAAGAAGCAAGGATTAGCAGTGAGTGTTGTTATGGTGGTGTTGTTTCTGTTGGTTGAGTTAACAGTGAGTTTGAGTTTGAGTTCCAGAACTGAATGGTTTGCTTTATTGGAACTTCGTTCATCGATGGGGATAAGAGGAAAAGATTGGCCCAAAAAAACCGAACCGTGCAGGAACTGGACCGGAATCCGGTGCCAGAACGGTCGAGTTGTGGGCATCAACGTGGCCGGGTTGAGGCGAACCCGGTTGGGTCGTCTCAACCCGGTTTTCGAAGTGGATTCCCTTGCCAATTTCACCCTCTTGGACTCTTTCAATGCTTCTGGGTTCATGCTCAAAGGGTCAATTCCTGATTGGTTTGGTGAGAGACTTGGTGCACTCCAAGTGCTTGATTTAAGGTCTTGTTCAATAACTGGTGTGATTCCTGGTTCACTTGGTAGTTTGAGTAGGTTGAAGTCTTTGTTTCTTTCAGGGAATAATCTCACTGGTAGGGTGCCTTCAAATTTGGGGTTGTTGTCTGGTCTTTCTGCTCTTGATCTCTCTGGTAACTTGCTTTCAGGATCAGTACCTAGCTCTTTCTCTCAGCTTGGTAACCTCACAAGGCTTGATCTTTCTTCCAATTACTTATCTGGNTCTATTCCACCTGAATTGGGTTCCCTTTTGAATCTCAAAAATTTGAACCTTTCTGATAATTCCTTCACTGATTCGNTTCCCTCTCAGCTTGGTAACCTTTCCAAGTTGGTTGAGCTTGATCTTAGTGTGAACTTTCTGTCCNGGTCGTTGCCCGGTAATTTGTTTTCCTCTTCTAGTCTTGCTTCTCTTCAAGTTCTCANTCTGAGTAGGAATTCACTTGGTGGTGTTCTTCCTGCTACTTTGTGGTCAATGCCCGGCTTGCGCTTTCTCGATGTATCCGGCAACAACCTCACTGGACCGCTTCCCAATTTGTTGTCTGGTTCGAATGTTAGCTCTACCGGTGCCATNTTCAATCTCTCAAACAATTTGTTATATGGACCTGTGAATAATAGTTTGCTTAATAAGTTTAAAATGATTGATTTATCTGGTAATTATTTGGAAGGTGAGGTGCAAGGTGGTGGTCTTAGTGATGTCACTCTAGCTAGAAATTGCTTTCAGATGATTTCAAACCAGAGGGATTTGGAGGAGTGTAGACTGTTTTATGTTGAGAGAAATTTAGCCTTTGCTCCTGGTGTCCTAGAACCTGAGTCCAGGAAAGACAAACAAGTGATATTCATATTGGCAGGTGTATTTGGTGGGCTTGGCATTATTGTGCTACTGGTATTGGTCCTCATATTGGTTCTAAGGCAATGTCGTAATAGTAAAAGTTCNGATATCCAAAGAGGGACCGCGAATGGGGGGCCTGTACCTGAAGGGGAAAGTCCTACACCTCCCAAGGATCCTGTCTTTGTAGCTGGCGTGGGNGAATCATTTACTTTTGAGCAAATGCTCCATTTGACCGGCAATTTTGCTGAAGNGAACATCCTAAAGCACGGTCATTCCGGACACCTTTTCTGGGGAGTCTTGGAAAATGGAGCAACCGTGGTTGTCAAAAGGGTAGATTTAAATTTATTTAAGAGAGAATCTTACATTGTGGAATTGGGATTGTTAAGCAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGGCACTGCTTGGACAACGAGAAGGAAAAATGTATAGTTTACAAGCATATGCCAAATGGAGATTTGGCCACTTCCTTGCANAGAGTCACCGGTTCAGATGGTAAATTACAGTCCCTGGACTGGATCACAAGATTGAAAATTGCGATAGGAGCTGCTGAAGGCCTAGCTTACCTACATGAGTGCAGCCCTCCCCTTGTTCACAGTGATATCCGAGCTAGTAGCATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACTGTCCAAGNTGATCTTCATCAGAGTGTCATCTCAAGGGTTTTCAGCAAGGCACCATCTTCTAATCAAGACAATTCTGGTAAATCATCTGTGACATGCGCCTACGATGTCTACTGCTTCGGGAAGATTTTACTTGAGCTCGTTACCGGTAATGTCGACATCAGCAAATCAGATGATGCCACCACAAAGGAGTGGTTAGAGCAAACCATGTGTTACATAAGCATATTCGATAAAGAACGGCTGAATAAGATTGTTGACTCGTCTTTGATCGTTGATGAGGACCTATTGGAAGAGGTGTGGGCTATGGCAATTGTGGCCAAGTCATGCCTAAATCCAAAACCTTCCAAACGTCCNCCCATGAGACATGTCCTCAAAGCACTTGAAAATCCATTGAAGATTGTGAGAGAAGAGAATTTCAGCTCAGCAAAGTTGAGAACAACTTCATCTAATAGATCTTGGAGCACTGCATTCTTTGGTAGTTGGAGACACAGCTCATCATCAGATAGTGCTGCTGCCACAACACATGCAAACAAGGAGGGTACTAGTGGCATTAAACATGCAGGAAGAGTAGGTTCTCAAGGTAGTGGTGGCAATGATCACTCATCTTCCAATAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAATGCAAGATGTGNAGAATGGAGAGGCAAGATGAACAGTTAGGAAATGGACTTGGTTATTCTTTTATTGGGGAGGTTTTNCCTCTTTCAGGGTAATAGCAATTGTTTGTTATTAGCATTGTCAAACTCAAGCTACCTAGCTAGAATCCTGATAGGGACTTGGATATTATGGAGTGTCTAAGTCCCACATTGAGTAGTATGGAGTGCTCGGTGAAGTACTTAAGTGTCTTGGTTCTTTCCCCTTGATAGCTGGCTTTTCAAGAAANGGTTCTCCATTTACTTGGGTGCTTATCAAATCCATTGTGGTCCATCACCACCATGTTTAAGTAATGAAAAACCATACTGCTGTTGGTGATTGTTTTNGCTTTCTAGAGCTCTGATCAAGCAGTACGCATTGAAACTCTGGTACAAGAGCCCTGGTGAAATTGAATAATTTTACTCGATCAACCGATTTGTTTAAAGCACACACCCCTCCCTGTAGTTCAATAAATGTGACAGATTGTAAAATAATGAGGGTTTTCATTTTTGTAAGGAATTGGAAGTGGTATAACTTTGTCTTTCTCATAAAATTTTATTTATAGGTAGGTAATATCTAAGTAGGATTGGAAGTCNTATTGAGATTAATGGCATATGTCCTAGTACTGGAGCGTGGTAAACATTTTGCGCTTTAAAAAAACATAATTGATGATTTGTCTGAGATGGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00916	10174	15471	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000916s00027850.1	PF13855.1	LRR_8	119	162	1.80E-07
Glyur000916s00027850.1	PF13855.1	LRR_8	175	233	5.90E-08
Glyur000916s00027850.1	PF13855.1	LRR_8	247	309	1.00E-08
Glyur000916s00027850.1	PF07714.12	Pkinase_Tyr	500	771	9.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.273
SRR1783600	control	9.487
SRR1783602	moderate drought stress	7.388
SRR1811619	moderate drought stress	7.358

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.308
DRR006520	Root Summer glycyrrhizin high producing strain	29.132
DRR006521	Root Winter glycyrrhizin high producing strain	8.303
DRR006522	Root Winter glycyrrhizin high producing strain	7.975
DRR006523	Root Summer glycyrrhizin low producing strain	59.895
DRR006524	Root Summer glycyrrhizin low producing strain	59.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	109.522
DRR006526	Leaf Summer glycyrrhizin high producing strain	108.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.650
SRR2868004	Drought Stress (root)	22.642
SRR2967015	Control (root)	22.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	206.186
SRR9715740	Leaf	258.219
SRR9715741	Leaf	256.130
SRR9715739	Root	19.814
SRR9715742	Root	101.643
SRR9715743	Root	86.765

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.032
SRR8749028	MeJA induced 9h	12.354
SRR8749029	MeJA induced 9h	4.419
SRR8749030	Uninduced	28.710
SRR8749031	Uninduced	14.432
SRR8749032	Uninduced	8.108

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.488
SRR8400027	Control - Root	37.392