Gene detail information of Glyur000915s00038246 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18710.1 | 0 | SECY homolog 1 |
| NR | XP_007138413.1 | 0 | hypothetical protein PHAVU_009G206700g [Phaseolus vulgaris] |
| COG | YP_005068612.1 | 4.00E-114 | preprotein translocase SecY subunit [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q9XQU4|SECY_PEA | 0 | Preprotein translocase subunit SECY, chloroplastic (Precursor) |
| trEMBL | tr|V7AXN3|V7AXN3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10407.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00915 | 27652 | 33928 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000915s00038246.1 | PF00344.15 | SecY | 178 | 510 | 1.60E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.157 |
| SRR1783600 | control | 6.080 |
| SRR1783602 | moderate drought stress | 5.055 |
| SRR1811619 | moderate drought stress | 4.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.034 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.431 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.330 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.973 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.320 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.671 |
| SRR2868004 | Drought Stress (root) | 7.666 |
| SRR2967015 | Control (root) | 6.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.565 |
| SRR9715740 | Leaf | 25.701 |
| SRR9715741 | Leaf | 11.028 |
| SRR9715739 | Root | 1.279 |
| SRR9715742 | Root | 2.550 |
| SRR9715743 | Root | 2.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.740 |
| SRR8749028 | MeJA induced 9h | 9.739 |
| SRR8749029 | MeJA induced 9h | 5.211 |
| SRR8749030 | Uninduced | 3.610 |
| SRR8749031 | Uninduced | 1.739 |
| SRR8749032 | Uninduced | 2.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.734 |
| SRR8400027 | Control - Root | 9.260 |