Gene detail

Gene detail information of Glyur000914s00025715

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18950.1	8.00E-175	Integrin-linked protein kinase family
NR	XP_004485951.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0271682-like [Cicer arietinum]
COG	YP_001958461.1	4.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1.00E-41	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A072VEQ0\|A0A072VEQ0_MEDTR	0	Integrin-linked kinase family protein {ECO:0000313\|EMBL:KEH36655.1}

Sequence

Transcript Sequence

>Glyur000914s00025715.1
CAGAAACAACGACTGAGATCATCTCCAATCTACACAGCACAACGTCAGCACGGCAAATTTTATCTGCAGCCGTCAGGGCGCACGTTATCAACCGTTCTTACACTGCGCCGCCTTGCAGGATTCCGTTCACCATCGCGCTGGCGCTGTCAATAAATCACTAGCAGACGCGTCACGCGCTTAACNCAACGCGTAAAGGCCACTGCTTTCTCCTCCTCCTCCTCCTTCCTCAGTTCAAACATGGCCACGTTGACTGCGCTTAAACAAAACGTTGAACATTGATCATTCACAAGTGGGGCTACAGAGGACTTTGGAAAACTTCAAAGCAAAGCAAAAAGTAACAACAAAGCTCTATCCATTTTTTGCTTTTGTAAAATTTTCCGCACTCCAATCCTCAAAATCCAATCTTTCTCGACGCTGCTGAGATCTTCCACATTCATTCTGTGGTGTTTTTTCTGCAATGGAAACGAAAAACCCTCCAAGGTTTACGCTAGGGAAGCAGTCATCGCTGGCACCAGAACGCCACGGTGAAAAAGAACAAGGGCTTCAAAACGACGATGGGGATGCTATTGATCCCGGGGTGAGGTTGATGTATTCGGCCAACGAAGGAGATGTGGATGGTATCAGTGAGGTGTTGGAATCGGGTGTGAGTGTGAATTACAGGGATATTGATGGCCGCACTGCTCTTCATGTTGCTGCGTGTCAGGGCTTGACTCATGTCGTTGCTTTGTTGCTCGAGAAAGGTGCTGACGTTGACCCTAAAGATCGATGGGGGAGCACGCCCCTTGGAGATGCTATATATTATAAAAACAATGACGTGATCAAACTTTTGGAGAAGCATGGAGCAAAGCCTCTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAATATGAAATCAATCCGAAAGAACTTGATTTTACCAACAGCGTGGAGATAACAAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGGACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGATGTGATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTAGTCCAATTTCTGGGTGCTGTGACACAGAGTAGTCCAATGATGATAGTGACAGAATATCTTCCCAAGGGTGATCTTNGCTATTTCTTGAAAAGAAAAGGAGCTTTAAAACCAAGTACAGCTGTTAGATTTGCACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTAGCAGTGAAAGAAGACAGGCCTCTGACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTCAAACAAGTCGAATATGACACCAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGTCCTCCTTTTTATGCGAAGCGTGACGATGAGGTTCCTAAGGTGTATGCTGCGAAAGAGCGGCCACCCTTCCGAGCCCCAACCAAACGTTATTCTCATGGACTTCGAGAATTGATTGAAGAGTGCTGGAATGAGAATCCAGCAAAAAGGCCAACATTCAGGCAAATAATAACAAGGCTGGAGTCCATCTACAACACAATCGGTCAAAAAAGACGTGAGACCATTGAAGTGCTTCCAGAATCTGGAAGCCTTATTGAAAAGGGACCATTCAAATGCAAGCAGTTGGGGAAGTTCATCTCGCTCCACTTCCAGCCGTATATGAAGGAGGAACAATTGGTGTTATTCTGTGACTTAGATATTGGCGTAAAGGCAAAGATAGCAAGCAAAATTTGACTTCTTGAGTTGGAGCATTGCAACATTTTCTTGTGTGTATTCCCAGGCTCACGATTGTGTTTTTGNCTTTCAAGATTCTTAATACTTCTCAACGATTTGTTTTCAACTACATTATATCTGGCCATAGAATTGCTTGTAACAAAAGCACATATACTAGGAATTTGCTCCATGTCTTGTACATTATATATGTATTATGCAGCTAGACTTTTTGTGTAAACATTATATGCAGTNGGACTTTTCACTAGATTTTTATTCGAAGAGCTTCACCGACTAAATCCAAATTGCACANTCTACGAATGTATAAACATCAACATTGAGCAACAAAATCATTAAGTGTCTGTTTGTTTTAGATTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00914	31335	37503	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000914s00025715.1	PF12796.2	Ank_2	43	131	3.50E-17
Glyur000914s00025715.1	PF00069.20	Pkinase	165	407	2.00E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.841
SRR1783600	control	18.026
SRR1783602	moderate drought stress	17.085
SRR1811619	moderate drought stress	17.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.444
DRR006520	Root Summer glycyrrhizin high producing strain	23.215
DRR006521	Root Winter glycyrrhizin high producing strain	22.115
DRR006522	Root Winter glycyrrhizin high producing strain	21.428
DRR006523	Root Summer glycyrrhizin low producing strain	55.087
DRR006524	Root Summer glycyrrhizin low producing strain	54.676
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.639
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.324

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.448
SRR2868004	Drought Stress (root)	72.855
SRR2967015	Control (root)	62.459

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.672
SRR9715740	Leaf	33.274
SRR9715741	Leaf	92.969
SRR9715739	Root	19.686
SRR9715742	Root	38.425
SRR9715743	Root	34.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.802
SRR8749028	MeJA induced 9h	64.844
SRR8749029	MeJA induced 9h	49.380
SRR8749030	Uninduced	137.565
SRR8749031	Uninduced	160.476
SRR8749032	Uninduced	73.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.234
SRR8400027	Control - Root	46.909