Gene detail

Gene detail information of Glyur000914s00025713.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44530.2	0	homolog of histone chaperone HIRA
NR	XP_003540239.1	0	PREDICTED: protein HIRA-like isoform X1 [Glycine max]
COG	NP_487506.1	9.00E-24	hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q652L2\|HIRA_ORYSJ	0	Protein HIRA
trEMBL	tr\|K7LVP9\|K7LVP9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30890.2}

Sequence

Transcript Sequence

>Glyur000914s00025713.1
GTCAAAATCTCACTATATTTATTTATTTATTTGTACTGATTCTGGTTTTCACAGTGCTCTGAGGGAATCAAAACCAGCAATTTGCGTAGGAATCTCGTAGGTTTTCAGCATAGTGGGGTGAAGTTCTCAGCTCCTTCCAGTTCCCCCAAATTCAAGCCAGGTTTTGTTATTTTTTTCATTTTTTGAAATAAAAGAAAAAGGAATTGGAATTGGATTTGCAGCAAGCAGAGTGGAAGAGAGAGTGTTATTGATGTTAAAAAAGTTTTTTTTTTTTGGGGGGAAGATGATTGCCGAGAAACCTAGTTGGGTTAGACACGAGGGCATGCAAATTTTCTCCATTGATGTTCAACCCGGCGGGCTCAGGTTCGCCACTGGTGGTGGAGACCACAAGGTTCGCATATGGAATATGAAGTCCGTTAGCACGGACATAGAGAATGATGATTCTTCTCAAAGGCTTCTTGCAACCCTGCGGGATCACTTTGGGTCCGTCAACTGTGTTAGGTGGGCCAAGCATGGGAAATTTGTTGCATCAGGGTCTGATGATCAGGCGATATTGATTCATGAGAGAAAGCCTGGTTCAGGAACCACGGAATTTGGCAGTGGAGAGCCCCCAGATATTGAAAACTGGAAAGTCGCAATGACTTTGAGAGGGCACACTGCAGATGTGGTGGATCTTAATTGGTCTCCTGATGATTCTGCTTTGGCTAGTGGGAGTTTGGACAACACTATCCATGTATGGAATATGAGCAATGGCATTTGCACTGCTGTTCTAAGGGGCCACTCTAGCCTGGTTAAGGGGGTTGCTTGGGATCCTATTGGCTCTTTTATAGCAAGTCAATCTGATGATAAAACCGTCATTATTTGGCGAACTAGTGATTGGAGTCTTGCTCATAGGACAGATGGTCACTGGGCAAAATCACTTGGATCAACCTTTTTCAGGCGGCTCGGATGGTCTCCTTGTGGTCATTTTATCACCACCACTCATGGTTTCCAGAAGCCAAGGCATTCTGCCCCTGTGCTTGAGAGAGGGGAATGGTCTGCAACATTTGATTTCCTAGGGCACAATGCTCCGATCATTGTGGTGAAGTTCAACCATTCTATGTTCAGAAAGAATTCCCTTAATGCTCAAGAAGTGAAGTCCGTGNCTGTTGGGTGGTCCAACGGTGCCTCCAAGACTGGAAGCAAAGAGCCACAGCCTTACAATGTTATTGNCATTGGAAGTCAGGATCGGACTATAACAGTATGGACTACTGCAAGTCCCCGTCCTCTATTTGTGGCTAAGCATTTTTTTACTCAAAGTGTCGTGGATTTATCCTGGAGCCCAGATGGATATTCACTTTTTGCTTGTTCCTTGGATGGATCTGTGGCTACATTTCATTTTGAGGCAAAAGAACTTGGTCAGAGATTAGGTGATACTGAGCTGGATGAGTTGAAGAGAAGTCGTTATGGCGATGTGAGTGGTCGTAAAGCAAACTTAGCAGAAAGTCCAGCACAGTTACTGTTCGAAGCAGCTTCTTCCAAGCAAACATCTAGCAAAAAAGTGGTTTCTGATGTCCAACATAACCACACAATGACAAAGGCTTGTGTTAATGCAGGGGTCACTAAAAAGAATGTTGAGCCTCAAGTTGATGATGGTAAGAAGAGTGGAGGTCCTGTTGGTGATGGATCAAACATAGTTACAACCTCTGGCCGGGTTTCTAGTCCCATTAAACAAAGAGAATATAGACGACCTGATGGTCGTAAAAGAATTATTCCGGAAGCAGTTGGAGTGCCTGTTCAGCAGGAAAACATTTCTGGTACAGCTCAGCAAGCACTTGATTTTCCTCTCGTGTCTTCCGATTACAGAAAGGGTACTGACAGAGCTGTTTCTAATGATGATGACATAAGAGCAAGTACANTGGGAGGAGCACATTTCAGAAATTCAGATTTAAAAGAACGTTCTGGGGTTACTGCTAGGGCCACAATATCTGAGAGCCTAGTTATTGAGAAAGTTCCAGCTTCTGCTGGCAATGGAAGCATCAATGTTGAGCAGTTGGGCAATTCAATGTCTTCTAGTTCTTTAGCTGCTTGTAGTGCTACCCTTTCCATTAGAGTATTTGACAAGAAAGGTGGTGAAGATACTTCACCTATTCTTTTGGAAGCACGCCCAAGAGAACACGCTGTAAATGACATTGTAGGGGTGGGAAAAACATCCATGANGAAAGAAACAGAAATTGTATGCACAAAGGGGTCTCAGACACTTTGGTCTGATAGGATATCAGGCAAAGTCACTGTTTTAGCTGGTAACACAAATTTCTGGGCAGTTGGGTGTGAAGATGGATGTCTGCAGAAGATTTACACAAAGTGTGGGAGACGTGCAATGCCTACCATGATGATGGGATCAGCAGCAACATTTGTAGACTGTGATGAGTGCTGGACATTGTTGCTGGTGACAAGAAAGGGATCCCTTTACTTATGGGATTTATTCAACCGAACCTGTCTCCTTCAAGATTCATTGGCTTCTTTAGTTGCTTCAAGTCCTAACTCATCTGCTAAAGATGCAGGAACTATTAAAATCATATCTGCAAAGCTATCAAAATCTGGTTCCCCTCTTGTTGTGTTGGCCACTCGCCATGCTTTCCTATTTGACATGAGTGTCAAGTGTTGGCTGAGGGTTGCAGATGATTGCTTCCCTGCATCAAATTTTGCAAGCTCTTGGAGTTTGGGTTCAATTCAAAGTGGTGAGCTGGCAGCTTTACAGGTTGATCTTAGAAAATACTTGGCCCGGAAGCCTGGTTTGTCTAGAGTTACTGATGATGGAGTGCAGACACGTGCGCATTTGGAAGCTCAATTGGCTTCTTCCTTGGCTTTGGGATCTCCCAATGAATATCGCCAGTGCATATTGTCATACGTACGCTTTCTTACAAGGTAAGCAGATGAATCTCGATTACGGGAAGTATGTGAGAGTTTCCTTGGACCTCCAACAGGGATGGCTGAGGAAGCATCTTCAGATTCAAATAACTTAGCATGGGATCCTTTTGTGCTTGGAATGAGGAAACACAAGCTCCTTAGGGAAGATATTCTTCCATCCATGGCGTCGAACAGAAAAGTCCAGAGATTGCTCAATGAATTCATGGATCTGTTAACTGAGTATGGGATAGTTGATGCCAATCAAGACCAAAGGAATCCCAAGTTACCAAAGTCATCATCTTCACCAGCAGCAACCAATCCAATTGAGAGCGGTTCACTAGCAACAGACCAAGAGGACAGTGCTCCTCCAAAATTGAATCACAAGGATTCTGACCATGCAGTCATAGGTGACCAGGACAATATGCAACTGGAAAATGATCAAACAAATTTTCCTCCAGCACTCACAAATGAAGCTAGTTCAGATGCCCATATGACTGAACAAGTTAACCAGGATGCACAGGTAGAGGAAGAAGCTTCCTAACTNGTGCGTCTCACTATTGGAGGTAGTATTCATAGTAGGAGTGTATCAATATAGATAGGATGTGTAAGTGGCATGGATGAATCTAATTTCACGTTTTTGTACACCTTATAGGAAGCAATTATAAACAGTGTTTAAAGCTGATGATGGTCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00914	17153	23636	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000914s00025713.1	PF00400.27	WD40	27	52	0.0018
Glyur000914s00025713.1	PF00400.27	WD40	69	102	3.40E-07
Glyur000914s00025713.1	PF00400.27	WD40	126	164	5.10E-10
Glyur000914s00025713.1	PF00400.27	WD40	169	205	2.10E-08
Glyur000914s00025713.1	PF00400.27	WD40	265	332	0.032
Glyur000914s00025713.1	PF00400.27	WD40	348	372	0.1
Glyur000914s00025713.1	PF07569.6	Hira	699	885	4.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.353
SRR1783600	control	7.355
SRR1783602	moderate drought stress	8.258
SRR1811619	moderate drought stress	8.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.511
DRR006520	Root Summer glycyrrhizin high producing strain	11.171
DRR006521	Root Winter glycyrrhizin high producing strain	5.760
DRR006522	Root Winter glycyrrhizin high producing strain	5.648
DRR006523	Root Summer glycyrrhizin low producing strain	9.471
DRR006524	Root Summer glycyrrhizin low producing strain	9.485
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.990
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.768
SRR2868004	Drought Stress (root)	16.012
SRR2967015	Control (root)	16.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.894
SRR9715740	Leaf	22.098
SRR9715741	Leaf	19.498
SRR9715739	Root	4.833
SRR9715742	Root	12.594
SRR9715743	Root	11.806

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.583
SRR8749028	MeJA induced 9h	9.111
SRR8749029	MeJA induced 9h	3.038
SRR8749030	Uninduced	10.813
SRR8749031	Uninduced	4.281
SRR8749032	Uninduced	3.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.870
SRR8400027	Control - Root	16.381