Gene detail information of Glyur000913s00026131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55280.2 | 2.00E-54 | ribosomal protein L23AB |
| NR | XP_004492087.1 | 4.60E-101 | PREDICTED: 60S ribosomal protein L23a-2-like isoform X1 [Cicer arietinum] |
| COG | NP_579552.1 | 9.00E-21 | 50S ribosomal protein L23 [Pyrococcus furiosus DSM 3638] |
| Swissprot | tr|Q9AT35|RL23A_DAUCA | 7.00E-81 | 60S ribosomal protein L23a |
| trEMBL | tr|I1N527|I1N527_SOYBN | 4.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G52310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00913 | 62331 | 64312 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000913s00026131.1 | PF03939.8 | Ribosomal_L23eN | 13 | 65 | 1.30E-18 |
| Glyur000913s00026131.1 | PF00276.15 | Ribosomal_L23 | 73 | 151 | 9.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 518.812 |
| SRR1783600 | control | 522.424 |
| SRR1783602 | moderate drought stress | 296.608 |
| SRR1811619 | moderate drought stress | 295.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 429.830 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 425.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 159.388 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 155.364 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 350.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 350.912 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 107.706 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 108.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 359.554 |
| SRR2868004 | Drought Stress (root) | 237.471 |
| SRR2967015 | Control (root) | 227.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 137.124 |
| SRR9715740 | Leaf | 128.402 |
| SRR9715741 | Leaf | 114.785 |
| SRR9715739 | Root | 49.322 |
| SRR9715742 | Root | 119.465 |
| SRR9715743 | Root | 103.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2341.902 |
| SRR8749028 | MeJA induced 9h | 269.221 |
| SRR8749029 | MeJA induced 9h | 1497.110 |
| SRR8749030 | Uninduced | 53.168 |
| SRR8749031 | Uninduced | 189.286 |
| SRR8749032 | Uninduced | 272.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 332.605 |
| SRR8400027 | Control - Root | 281.460 |