Gene detail

Gene detail information of Glyur000913s00026130

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55330.1	5.00E-68	PsbP-like protein 1
NR	AFK34664.1	6.20E-129	unknown [Lotus japonicus]
Swissprot	tr\|P82538\|PPL1_ARATH	4.00E-84	PsbP-like protein 1, chloroplastic (Precursor)
trEMBL	tr\|I3S322\|I3S322_LOTJA	2.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:AFK34664.1}

Sequence

Transcript Sequence

>Glyur000913s00026130.1
ATGGCGTCCCTGCAGAATTCCCCTACACTCCACAGAACCCTTTTTCACAACTCTTTCCCTCAGAAGCACGGTACTTTTCGTTCATCTAGAAGAGAAGGCATTTCCTTCATTGTCAAAGCTGCCCATGAACCCTCACCTTCTTCAACCGGGTTTCTATCTCAAGATAAAGCGGGAAGGCGCCAAGTGATTGCCATTGGGGCTACTGNCCCATTAGTTTTTTTGTTCAACCAACACTCAAACTCTTTTGCTGCAGAAAATAAGAAAGGATTTTTGTCAGTTAGCTCCTTTGATCTTCTTTTTATCACGGGGAGTGGGCAGGAAGTAGTGATTGAAGGTCAAGATAAGGTGTTCAAAGATGTTATTGAACCACTGGAAAGCGTCAGTGTAAATTTGATCCCAACTAGCAAACAGGATATCAAAGAATTTGGGTCCCCTCAAGAGGTTGGTGAGACCCTAATAAAAAAGGTTTTGGCCCCAACAAACCAGAAAACAAAGATAATTGAGGCAACAGAGCAAGATATTGACGGAAAAGCATATTATCAATTTGAGTTCATTGCTCAAGCTCCAAACTACACTCGTCATGCTCTCAGCAAAGTCTCCATTGGCAATGGTTTGTTTTACACGGTGACCACAGGAGCAAACGAGAGAAGATGGAACAAGATGAAAGACAGATTGGAGACAGTCATTGAATCCTTCAAAATCTTCAATGTTTGATAACAATCGTTTGCTATTACACTATTAGAGATAATGTACCCTTCATCGGCCAAAATGTCATTCGTGAGCTTTATAATCCAAAGTTCAGTTTGCTGTTTGTAATTTTGTTGAATAGCAATACATCAATGGAGTCTTTGTGGTTAAGATTGTTGGTTATCACAATCTTAACTACAAACACTCCATTCATCACTGTTTTGGTTGGGTCTGTCTGTAACTGCGAATATCCTTTCCCCCTCCGGTACATCCATCTCCTTTCAGAAGATAAAAAACTACTAAATTTTAAAATAAATTTAATAAATAATAGAATAAGCACCCCTCTAAAATAGGTTGGTCCTAACCGGCTAAATCATCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00913	57543	60599	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000913s00026130.1	PF01789.11	PsbP	72	234	2.90E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.143
SRR1783600	control	0.188
SRR1783602	moderate drought stress	0.203
SRR1811619	moderate drought stress	0.213

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.195
DRR006520	Root Summer glycyrrhizin high producing strain	0.295
DRR006521	Root Winter glycyrrhizin high producing strain	0.103
DRR006522	Root Winter glycyrrhizin high producing strain	0.071
DRR006523	Root Summer glycyrrhizin low producing strain	0.930
DRR006524	Root Summer glycyrrhizin low producing strain	0.874
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.415
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.463

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.242
SRR2868004	Drought Stress (root)	2.169
SRR2967015	Control (root)	1.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.018
SRR9715740	Leaf	46.064
SRR9715741	Leaf	37.304
SRR9715739	Root	0.076
SRR9715742	Root	0.000
SRR9715743	Root	0.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.873
SRR8749028	MeJA induced 9h	1.153
SRR8749029	MeJA induced 9h	4.385
SRR8749030	Uninduced	1.167
SRR8749031	Uninduced	1.527
SRR8749032	Uninduced	2.722

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.284
SRR8400027	Control - Root	1.796