Gene detail

Gene detail information of Glyur000913s00026129.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55320.1	0	P-glycoprotein 20
NR	XP_004492090.1	0	PREDICTED: ABC transporter B family member 20-like [Cicer arietinum]
COG	YP_005367043.1	5.00E-93	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9M3B9\|AB20B_ARATH	0	ABC transporter B family member 20
trEMBL	tr\|I1JDS0\|I1JDS0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G10530.1}

Sequence

Transcript Sequence

>Glyur000913s00026129.1
ATAAAAATAAGAAAACAACTTAAAGCATATAGACGCCGGCGTTTGACCGTTAAACCTACAACGAAGAAAATCCAAACCCGAGAACATCAACAACAACAAAGAGTTCACAAATTTCGCGTGCTGCACCGGTGACCCTATCATCTCTCCTCTCCGTTCACAGTTTCCGACCTGAAAAATCAGAATAGGGAAACGGCGACGGCGGTGCCGGCAAAGGCCAGGACGACGTCGTTCGCCGGAAGAGAAAAAAAAAAAAGCAAAACAACAATTGTTAATAGCTCGAAGGATTTTTAGTTCCTGCGTGGATCTGCTTAATTGAGGATTTTCATTCGGGGAGAGAGAGAGAGAGAGACAAGAGAAGATGATGATATCGAGGGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTTTCAGAGGTATCGGAGCCACCGGAATCTCCGTCGCCGTACCTNGACCCCGGCGCCGAGACCTCCACGTCGCAGCAGGTGGAGGTCGAGGAGGAGATGGAGGAACCGGAGGAAATCGAGCCACCGCCAGCTGCGGTTCCCTTCTCGCGTCTCTTCGCATGCGCCGACCGGTTCGATTGGTTCCTTATGGCTGTAGGTTCCGTCGCCGCNGCGGCTCACGGCACCGCGCTCGTCGTTTACTTGCACTACTTCGCTAAGATCATCCATGTGCTGCGGATGGATCCTCAGCATAACACGTCGCAGGAGCGGTTTGACAGGTTCACCGAGCTTGCTTTAACCATTGTTTACATTGCTGTGGGAGTTTTTGCTGCGGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTCATCCAGTCTGCTCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTGTTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCCACAGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATGTAAGGACGTTGTATGCATTTACAAATGAAACATTGGCCAAGTACTCATATGCAACNTCACTGCAAGCTACTCTAAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTTACGTATGGACTTGCAATATGTTCTTGTGCATTGCAACTCTGGGTTGGAAGATTCTTGGTTATTCATGGAAAAGCNCATGGTGGTGAAATTGTAACAGCCCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACGAATTTTTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGACTATATGAGATGATAAGCCGATCATCCTCATCTGTTAATCATGATGGCACTGCACCTGATTCCGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAGAACTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACACTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAATTGGAATGGCTGAGGAGCCAAATAGGACTAGTTACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGGGACAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCTCATACATTTATCAGCTCATTAGGGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTATAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCCGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGGCTCTGGATCTGCTTATGNTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGGAATGCTGATTATATAGCTGTTATGGATGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTGTTGAACCTGGATGGCTTATATGCAGAGCTTCTACGATGTGAGGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACTGCAGCATTCCAAATTGAGAAGGATTCTTCAGCAAGCCATAGCTTCAACGAACCATCATCCCCTAAACTGATTAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCACGACCTCCAGATGGCATCTTTAACTTGCAAGAATCACCTAAAGTCCTGAGCCCACCACCTGAGAAGATGCTGGAAAATGGTCAGGCTTTGGATGCAGCTGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAGATTGATGTACAGNCTGTGCATCGACAAAAATCAAATGATTCTGACCCAGAATCCCCTGTTTCACCACTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAATGAGAGGAGAGAAGGATGCACGGCATCGAAAACCACCATCGCTTCAGAAGTTGGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATTGGTGCTGCTCTCTTTGGTTCTTTCAATCCCGCTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCTTACTATAGAATTAATGATCAACATCACTTGGAACGGGAGATAGACAAGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATTGCAAACTTTTTGCAGCACTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAGAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTAGGGTGGTTTGACGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTACGAGCTGCTTTTAGCAACCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGAAATTGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGACGCAGTTAGAAACATATACACTGTTGTTGCATTTTGTGCTGGCAATAAGGTAATGGATCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTTCACGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTCCTTTTTGNGTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTATAAAAAATGGTTACATGGATCCACCTACTGCGCTGAAGGAGTACATGGTTTTCTCATTCGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTCAAACGACGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAACACAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAANGGTGGACAGACAGTTGCTATTGTTGGAGTTTCAGGATCAGGAAAGAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGCCAAGTTTTACTGGATGGGAGGGATCTAAAGCTCTATAACTTAAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAACAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGGATAGCAAATGCTCATCATTTCATCAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAGCAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAATGCTCCTATCTTATTGTTGGATGAAGCAAGTTCATCAATTGAATCCGAGTCAAGCCGAGTGATACAAGAGGCTTTAGACACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCACATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCACTCATGATTCGTTGGCGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGCAAGGCTTTGCGCCAGCATCGGCTTGTTTAGTATGGGAATATGTGATATGACTCTTTGTTACTACTGTTGGTTCATGAGCATAGTTTAATTTTCTGCTTGAGTTGGACCACTAGTGACTTCTGCACCTGAAGGATTTTTCCAAGAATGTCAGGTGGAAACAATGGGTGGCAATGGTAATGATGGAGCTTGGATTATCACTCGGCATNGGTAGACATAGGAAGAGATACTGTAGGAGGAATAGATGCGTAGGATTTAAATATAGGTTTTTGGAGTTTGGTTGGTTTGTGGATTTAGGCTGGATTCTTTTGGAGGCAAGCAGCTTAGACTCAGGGTGTTTGTTTTCTATCCATGGTATTGATTTGTTTCTCAAGAGAAGGGGGAATCAACACTAATTCTGCTGAGGTGACTCTTTCACTCGACTTCCTTTTCACTCTCCCTAACCCAAGCGTGGATGATAAACGTATTCATAACTGTAATTTTGTTTTTCCAACTTGTGATATTTGTAGAAAATTCAGATCGAAGAGTTGTAACCTCTGTATATATATAGCGATAGTTTTTAGAAGGCATTCCTTTTGCTGCTTGAATCCTGAGTGTTTTNCCCCCTATATAATGGATGCAAATTTTCAAGTGTATTTTGCCACCCAAGAATCTTAAGAACATTCTNAGTCTTTTATA

Protein Sequence

>Glyur000913s00026129.1
MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSTSQQVEVEEEMEEPEEIEPPPAAVPFSRLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHVLRMDPQHNTSQERFDRFTELALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVVGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKRTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLGKGYDTQVGRAGIALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMXGRSTIIIARRLSLIRNADYIAVMDEGQLVEMGTHDELLNLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSASHSFNEPSSPKLIKSPSLQRISNVSRPPDGIFNLQESPKVLSPPPEKMLENGQALDAADKEPSIRRQDSFEMRLPELPKIDVQXVHRQKSNDSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDASVTMRGEKDARHRKPPSLQKLAELSFAEWLYAVLGSIGAALFGSFNPALAYVIGLVVTAYYRINDQHHLEREIDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMDLYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFXCNALLLWYTAICIKNGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNTALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVXGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVIQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGLYVRLMQPHFGKALRQHRLV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00913	45068	54872	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000913s00026129.1	PF00664.18	ABC_membrane	87	356	1.40E-32
Glyur000913s00026129.1	PF00005.22	ABC_tran	428	572	1.30E-24
Glyur000913s00026129.1	PF00664.18	ABC_membrane	837	1097	1.80E-33
Glyur000913s00026129.1	PF00005.22	ABC_tran	1163	1311	2.40E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.171
SRR1783600	control	7.298
SRR1783602	moderate drought stress	9.455
SRR1811619	moderate drought stress	9.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.839
DRR006520	Root Summer glycyrrhizin high producing strain	8.976
DRR006521	Root Winter glycyrrhizin high producing strain	10.560
DRR006522	Root Winter glycyrrhizin high producing strain	10.139
DRR006523	Root Summer glycyrrhizin low producing strain	10.475
DRR006524	Root Summer glycyrrhizin low producing strain	10.462
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.151
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.107

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.721
SRR2868004	Drought Stress (root)	20.323
SRR2967015	Control (root)	20.307

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.446
SRR9715740	Leaf	9.737
SRR9715741	Leaf	13.752
SRR9715739	Root	3.165
SRR9715742	Root	14.395
SRR9715743	Root	12.888

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.612
SRR8749028	MeJA induced 9h	10.975
SRR8749029	MeJA induced 9h	36.659
SRR8749030	Uninduced	14.714
SRR8749031	Uninduced	70.424
SRR8749032	Uninduced	60.594

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.776
SRR8400027	Control - Root	13.455