Gene detail information of Glyur000913s00026127 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39490.1 | 3.00E-51 | F-box family protein |
| NR | KHN27208.1 | 0 | F-box protein [Glycine soja] |
| Swissprot | tr|Q5S4V7|FB129_ARATH | 1.00E-63 | F-box protein At2g39490 |
| trEMBL | tr|A0A072TXL7|A0A072TXL7_MEDTR | 0 | F-box plant-like protein {ECO:0000313|EMBL:KEH21896.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00913 | 37261 | 39467 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000913s00026127.1 | PF00646.28 | F-box | 11 | 46 | 0.00012 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.345 |
| SRR1783600 | control | 1.351 |
| SRR1783602 | moderate drought stress | 1.235 |
| SRR1811619 | moderate drought stress | 1.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.183 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.183 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.077 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.731 |
| SRR2868004 | Drought Stress (root) | 8.631 |
| SRR2967015 | Control (root) | 6.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.151 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.415 |
| SRR9715742 | Root | 1.695 |
| SRR9715743 | Root | 1.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.645 |
| SRR8749028 | MeJA induced 9h | 3.565 |
| SRR8749029 | MeJA induced 9h | 6.324 |
| SRR8749030 | Uninduced | 2.520 |
| SRR8749031 | Uninduced | 12.130 |
| SRR8749032 | Uninduced | 3.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.895 |
| SRR8400027 | Control - Root | 4.817 |