Gene detail information of Glyur000913s00026126 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37430.1 | 1.00E-23 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | NP_001237020.1 | 2.13E-79 | uncharacterized protein LOC100500371 [Glycine max] |
| Swissprot | tr|Q9SLD4|ZAT11_ARATH | 2.00E-33 | Zinc finger protein ZAT11 |
| trEMBL | tr|I1JDR7|I1JDR7_SOYBN | 2.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00913 | 27179 | 27772 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000913s00026126.1 | PF13912.1 | zf-C2H2_6 | 41 | 66 | 2.30E-10 |
| Glyur000913s00026126.1 | PF13912.1 | zf-C2H2_6 | 93 | 118 | 4.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.566 |
| SRR1783600 | control | 5.542 |
| SRR1783602 | moderate drought stress | 6.970 |
| SRR1811619 | moderate drought stress | 7.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.157 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.095 |
| SRR2868004 | Drought Stress (root) | 88.550 |
| SRR2967015 | Control (root) | 74.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.826 |
| SRR9715740 | Leaf | 17.398 |
| SRR9715741 | Leaf | 39.346 |
| SRR9715739 | Root | 7.755 |
| SRR9715742 | Root | 4.332 |
| SRR9715743 | Root | 4.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 511.468 |
| SRR8749028 | MeJA induced 9h | 728.086 |
| SRR8749029 | MeJA induced 9h | 745.261 |
| SRR8749030 | Uninduced | 185.965 |
| SRR8749031 | Uninduced | 291.088 |
| SRR8749032 | Uninduced | 97.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.769 |
| SRR8400027 | Control - Root | 15.742 |