Gene detail

Gene detail information of Glyur000913s00026124.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G65750.1	2-oxoglutarate dehydrogenase, E1 component
NR	AES78037.2	E1 subunit-like 2-oxoglutarate dehydrogenase [Medicago truncatula]
COG	YP_001415072.1	2-oxoglutarate dehydrogenase E1 component [Xanthobacter autotrophicus Py2]
trEMBL	tr\|G7KVS0\|G7KVS0_MEDTR	E1 subunit-like 2-oxoglutarate dehydrogenase {ECO:0000313\|EMBL:AES78037.2}

Sequence

Transcript Sequence

>Glyur000913s00026124.1
AAGAAGGAAACACAAATATTCGTTTTTTGTTCGAAAAGTGCGATAATGCGAAACCTACGTGGGAATGCCGATCGCGATAGAAAGAGAATAATCAATTTATCAAATCAAAGCGTTGAATTTTCCCATTTTTTGACATAAAAACAAACATAAAACATAAAACACTCTCCAACTGTCTCTCACACAAGCTTCGCTTCAACGCGATTAGGGTTCGCCCTTTCAAATCTCTCTCCCATTGTCTTCACCCAGAGGCAGGGCCCTGAGGATATAGGATCGTTGGGAAAAAAAGCTGGTGATCTCTGTTGATTGATTGTTGGATTGGAGTGAGAGGTGTTATCTACCAGTGATGGCATGGTTTAGAGCTGGAGCTAGCATAGCAAAACATGCAATTAGGAGGACCCTTTCTCAGGGTGGATCCTCCTATTTCGTGTCAAGGGCTAGAGTGCTTCCATCATCACAGAATAGGAAGTTCCACACCACTGTTTTCAAATCCAAGGAGCAAGCTGCACCTGTACCCCGTCCTGTTCCCCTTTCTAGGTTGACTGACAGCTTCTTAGATGGGACGAGCAGTGTGTACTTGGAGGAGCTTCAGAGGGCCTGGGAGGCTGACCCCAACAGTGTTGATGAGTCCTGGGACAATTTCTTCAGGAACTTTGTGGGTCAGGCTACCACCTCCCCTGGCCTTTCTGGTCAAACAATCCAGGAGAGTATGAGGTTGCTGTTGTTGGTCAGGGCATACCAGGTTAATGGCCACATGAAGGCCAAGCTGGATCCGTTGAATCTGGAGGAAAGGGAAATCCCTGAGGATTTGGACCCTGCCCTTTATGGTTTTTCTGAGGCTGATCTTGATAGGGAGTTCTTCTTGGGGGTGTGGAGGATGGCTGGTTTTTTGTCTGAGAATCGTCCTGTCCAAACCCTTAGGTCCATATTGACACGGCTTGAGCAGGCTTATTGTGGAAGCATTGGGTACGAGTATATGCACATTGCGGATCGCGACAAGTGTAATTGGCTTAGGGACAAAATCGAAACCCCTACGCCTACGCAATTTAACCGGGAGCGTCGTGAGGCTATCTTCGATAGGCTCGCTTGGAGTTCACTGTTTGAGAACTTCTTGGCCACCAAGTGGACTTCGGCTAAGAGGTTTGGGCTTGAAGGGGCAGAGACTCTTATTCCTGGCATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAGCATAGTTATGGGAATGGCTCACAGAGGAAGATTGAATGTTTTGGGTAATGTAGTGCGGAAGCCGTTACGTCAGATTTTTTGTGAGTTTAGTGGTGGTCAGCCTGAGGATGAAGTGGGNCTTTACACGGGAACTGGTGATGTTAAGTATCACTTGGGAACATCTTATGATCGCCCTACTAGAGGTGGCAAGAGGATACATTTGTCTTTGGTGGCAAATCCTAGTCACCTGGAAGCTGTTGACCCTGTTGTTGTCGGGAAAACTCGAGCTAAGCAGTATTACTCAAACGATGTGGACAGGACAAAAAACATGGGTGTTTTGATTCATGGAGATGGTAGTTTTGCTGGACAGGGCGTGGTCTATGAAACCCTACATCTAAGTGCCCTTCCGAATTACACTACTGGTGGGACTATTCACATTGTGTTAAACAATCAAGTTGCATTTACAACTGATCCAGCGGCTGGCAGGTCTTCACAGTACTGCACTGATGTTGCTAAAGCTTTAGATGCTCCCATCTTTCATGTGAATGGTGATGATGTGGAAGCAGTTGTACATGCCTGTGAACTTGCTGCTGAGTGGCGCCAGATTTTCCATTCAGATGTGGTTGTGGACTTGGTGTGTTATCGTCGATTTGGCCACAATGAGATTGATGAACCATCTTTCACACAGCCTAAAATGTATAAGATCATCCGGAACCATCCGTCAGCTCTTGAAATCTATCAAAAGAAGCTTTTGGAAAAAGGGGAGCTGACACAAGAAGACATTGATAATATACACAAGAAGGTCACATCAATTCTAAATGAAGAATTTTTGGCTAGCAAAGATTACATTCCAAAAAGAAGGGATTGGCTCTCAGCATATTGGCTTGGTTTCAAATCACCTGAACAGCTTTCCCGTGTCCGAAACACTGGCGTGAAACCAGACATCTTGAAAAATGTTGGGAAAGCAATCACAACTATCCCTGAAATTTTCACACCTCATAAAGCAGTGAAGAGGATTTATGATAACCGTGCCCAAATGATTGAAACTGGGGAAGATATTGACTGGGGATTTGCAGAGGCACTTGCTTTTGCTACCTTGCTTGTTGAAGGTAACCATGTTCGATTGAGTGGTCAGGATGTTGAAAGAGGAACGTTTAGTCACCGTCATGCTGTAGTTCATGATCAGGCAACAGGGGATAAATATTGCCCCCTTGACCATGTTATAATGAACCAAGATGAAGAGATGTTCACTGTTAGCAATAGCTCACTGTCTGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCCAATTCATTGATAATTTGGGAGGCTCAATTTGGAGATTTTGCTAATGGGGCTCATGTGATATTTGACAATTTCTTGGCTTCTGGTGAGTCTAAGTGGCTCCGTCAGACTGGGCTAGTTGTGTTACTTCCTCATGGTTATGACGGCCAGGGCCCTGAGCATTCAAGTGCAAGACTGGAACGCTTTCTTCAGATGGCGGATGACAATCCTTNTGTTATCCCTGAAATGGATCCAACTCTTCGGAAACAGATTCAGGAGTGNAATTTGCAGATTGTGAATGTCACAACTCCTGCCAATTTTTTCCATGTTTTAAGGAGGCAGATCCATAGAGAATTCCGTAAACCTCTCATTGTAATGTCCCCCAAGAATCTGCTTCGCAGCAAGTCTTGCAGATCAAATCTATCTGAGTTCGATGATGTCCAAGGCCACCCAGGTTTTGACAAACAGGGAACCAGATTTAAGCGCCTCATAAAAGACCAAAATTACCACTCCGATGTTGAGGAGGGTATTAGACGTTTAGTACTCTGCTCTGGAAAGGTTTACTATGAACTTGATGAACAACGAACTAAGGCTGATGCAAAGGATGTTGCAATATGTCGGGTGGAACAGCTTTGTCCTTTCCCTTACGACCTTGTCCAACGAGAGCTTAAACGATATCCAAATGCGGAGATTGTTTGGTGTCAAGAGGAGCCAATGAACATGGGTGGATACACTTACATCTTACCCCGACTTATATCTTCCATGAAAGCTGCAGGTAGGGGAAGTTATGATGATGTCAAATATGTGGGTCGTGCTCCATCTGCAGCCACAGCCACCGGTTTCCTCAAGGTTCACCAGAAGGAGCAGGCTGAGATTGCTGAAAAGGCCGTNCAACGCGAACCAATCAGCTTCCCATACTGAAAAAAGCTTTGCAGATGCAAATCCTTTTTGAGAATTATATAGTAGNGCACTTGATTTATTTACACAAGGAACAATAGTTGGAAGGTGGCTTAAATATACTTTGCTTTTTGAGTTTTGACCTATATATGTTTCAACAAGGTAATAATTGCTTTGCTATACAACACGGAAAGTCGTGTTGCCTTACAGNTTGAATCGATTCTTGATGTTTTCAGTTTTCACCTTTTTTCGTTTTATTTTCCTTATACTATGTAATTTGGCAATGCATCTTCAATAAATTTTGTGACACGTAATTCCAGCTTTCAGAGGCATGCTTGGTTGTATGGCCTTTAAGAACTTGGCCAACTCTGCTGCTTCTCCAATAAATCATTTTTCTTTC

Protein Sequence

>Glyur000913s00026124.1
MAWFRAGASIAKHAIRRTLSQGGSSYFVSRARVLPSSQNRKFHTTVFKSKEQAAPVPRPVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQATTSPGLSGQTIQESMRLLLLVRAYQVNGHMKAKLDPLNLEEREIPEDLDPALYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRDKCNWLRDKIETPTPTQFNRERREAIFDRLAWSSLFENFLATKWTSAKRFGLEGAETLIPGMKEMFDRASDLGVESIVMGMAHRGRLNVLGNVVRKPLRQIFCEFSGGQPEDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVLNNQVAFTTDPAAGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHACELAAEWRQIFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRNHPSALEIYQKKLLEKGELTQEDIDNIHKKVTSILNEEFLASKDYIPKRRDWLSAYWLGFKSPEQLSRVRNTGVKPDILKNVGKAITTIPEIFTPHKAVKRIYDNRAQMIETGEDIDWGFAEALAFATLLVEGNHVRLSGQDVERGTFSHRHAVVHDQATGDKYCPLDHVIMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLIIWEAQFGDFANGAHVIFDNFLASGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMADDNPXVIPEMDPTLRKQIQEXNLQIVNVTTPANFFHVLRRQIHREFRKPLIVMSPKNLLRSKSCRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNYHSDVEEGIRRLVLCSGKVYYELDEQRTKADAKDVAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGGYTYILPRLISSMKAAGRGSYDDVKYVGRAPSAATATGFLKVHQKEQAEIAEKAVQREPISFPY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00913	10675	17084	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00164	OGDH, sucA	EC:1.2.4.2	Carbon metabolism	map01200
			Citrate cycle (TCA cycle)	map00020
			Lysine degradation	map00310
			Tryptophan metabolism	map00380

Gene Ontology

biological_process

GO:0006099 tricarboxylic acid cycle

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity

GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

GO:0030976 thiamine pyrophosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000913s00026124.1	PF00676.15	E1_dh	249	566	1.10E-61
Glyur000913s00026124.1	PF02779.19	Transket_pyr	637	851	4.60E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.573
SRR1783600	control	56.708
SRR1783602	moderate drought stress	60.533
SRR1811619	moderate drought stress	60.369

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	69.544
DRR006520	Root Summer glycyrrhizin high producing strain	68.797
DRR006521	Root Winter glycyrrhizin high producing strain	51.701
DRR006522	Root Winter glycyrrhizin high producing strain	50.375
DRR006523	Root Summer glycyrrhizin low producing strain	75.510
DRR006524	Root Summer glycyrrhizin low producing strain	75.892
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	140.025
SRR2868004	Drought Stress (root)	134.011
SRR2967015	Control (root)	134.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.354
SRR9715740	Leaf	71.461
SRR9715741	Leaf	100.940
SRR9715739	Root	63.027
SRR9715742	Root	112.807
SRR9715743	Root	103.971

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	145.710
SRR8749028	MeJA induced 9h	58.054
SRR8749029	MeJA induced 9h	79.002
SRR8749030	Uninduced	16.604
SRR8749031	Uninduced	46.422
SRR8749032	Uninduced	28.572

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	99.503
SRR8400027	Control - Root	98.874