Gene detail

Gene detail information of Glyur000913s00026123

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59840.1	3.00E-90	Ras-related small GTP-binding family protein
NR	KHN37331.1	1.69E-149	Ras-related protein RABE1c [Glycine soja]
COG	YP_008431664.1	1.00E-29	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|P28186\|RAE1C_ARATH	6.00E-138	Ras-related protein RABE1c
trEMBL	tr\|I1LFC6\|I1LFC6_SOYBN	6.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G43590.1}

Sequence

Transcript Sequence

>Glyur000913s00026123.1
GTGAGAGAGAGTATAAAGCGACAGAAGAAAGATAGACAGAGAGAGCCAAACTCTNTCCGAAAATCAAAAGCAGAATAGAACGGAACCCATTTGGATTGGATCCTCNCTTCTCTCTTCTCTGAGACCCTTTTCGTTTCCACAACACTTTTCACGCCTCTCTGTAAGGAGACACAGACAGAGAGAGTCATTTTTTGTTGCGTTTGCGTGTGTNGTTGTGGTGAGCGATGGCAGCAGCACCTGCAAGGGCACGTGCCGATTACGATTACCTCATCAAACTTCTCCTTATTGGCGACAGCGGTGTGGGGAAGAGTTGTCTGCTTTTGCGATTTTCTGATGGTTCCTTCACAACCAGTTTTATCACCACCATTGGCATTGATTTTAAAATAAGAACCATCGAACTTGATGGTAAACGCATTAAGTTACAAATCTGGGATACAGCTGGTCAGGAGCGATTTCGAACTATTACCACAGCTTATTACCGTGGAGCCATGGGTATCTTGCTCGTTTATGATGTTACTGATGAAGCATCTTTCAATAATATTAGGAATTGGATTCGCAACATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTGGGTAACAAGGCTGATATGGATGAAAGTAAAAGGGCGGTGCCTACCTCCAAAGGTCAAGCTCTTGCTGATGAGTATGGTATTAAGTTTTTTGAAACAAGTGCAAAGACAAACATGAATGTAGAGGAGGTTTTCTTTTCAATAGCAAGAGATATCAAACAAAGGCTTGCTGACACAGATTCTAGGGCTGAGCCTCAGGCTATCAATATTAACCAACAAGACCAGGCAGCCAATGGTGCTCAAAAGTCGGCTTGTTGTGGTTCATGAGAAGAATCAGTTATCTGCATTGCAGTAAGAGGGTGCAGATTCAACACTTTGCCCTCACCTGGTTGCTATAGTTATTTTTATGACATTAGAAAGTGGGAGCATGTAATTTGTCCGTATGTAATTCCCAACTGCAAAAAGGTTATGGTTCCAAGATAGTATTTTGATTTATTTATTTTTTGCTCACTCAGTTGTTGGATATGTTGTGATTAGTTTATTTGCTCCACTCCTCTCTTTCATTGTTTTTTTTAACGAGTAATTAATATGTTATATACTTATATTAGTGGAAAGATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00913	4901	8922	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000913s00026123.1	PF00071.17	Ras	17	178	1.00E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.511
SRR1783600	control	9.379
SRR1783602	moderate drought stress	9.824
SRR1811619	moderate drought stress	10.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.631
DRR006520	Root Summer glycyrrhizin high producing strain	19.311
DRR006521	Root Winter glycyrrhizin high producing strain	19.939
DRR006522	Root Winter glycyrrhizin high producing strain	19.212
DRR006523	Root Summer glycyrrhizin low producing strain	19.290
DRR006524	Root Summer glycyrrhizin low producing strain	18.764
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.135
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.950
SRR2868004	Drought Stress (root)	41.165
SRR2967015	Control (root)	43.938

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.599
SRR9715740	Leaf	48.911
SRR9715741	Leaf	38.833
SRR9715739	Root	17.545
SRR9715742	Root	14.139
SRR9715743	Root	14.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	124.373
SRR8749028	MeJA induced 9h	18.626
SRR8749029	MeJA induced 9h	70.478
SRR8749030	Uninduced	24.786
SRR8749031	Uninduced	59.251
SRR8749032	Uninduced	62.298

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.420
SRR8400027	Control - Root	38.226