Gene detail

Gene detail information of Glyur000911s00029415

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29150.1	3.00E-156	non-ATPase subunit 9
NR	XP_007045996.1	0	26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
Swissprot	tr\|Q9LP45\|PSD11_ARATH	0	26S proteasome non-ATPase regulatory subunit 11 homolog
trEMBL	tr\|A0A061EB23\|A0A061EB23_THECC	0	26S proteasome non-ATPase regulatory subunit 11 {ECO:0000313\|EMBL:EOY01828.1}

Sequence

Transcript Sequence

>Glyur000911s00029415.1
ATGTTGCACATCCAAATGGCTGCCAGATATCTTCCTTGCTGTGCCTGTGATGCTGTTTTGGGGCATGCCATCGGTGGCTGCCATATGCCATTGACATTTGAAAACGTATCTAGTGCAGACAATTGGAATAAGAACTTTGTCCTAGCAGCAGCCATGTCTTCTTTTCTTCCCGCCACAACAGAGTCAATTNCTCAGGCATTGGAGGCTAAAGACCCATCTGAAGCCATCTCCATTCTTTATCGTGTGCTTGGTGACCATTCTTCTTCTCCAGAAGCTCTGCGCATGAAAGAGCAGGCTATTGTGAGGGGAATAATTGATTCTATTGCTAAAATATCAGGGANGTCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCAATGGACTCGTGCCGAAAAGNGTACCTTTCTGAGGCAGCNAGTTGAGGCAAGGCTTGCAGCTCTTCTGATGGAAAGTAAGGAATACTCAGAAGCTTTGACTCTCCTTAGTGGCTTGGTCAAAGAGGTTAGAAGATTAGGCGACAAACTTTTACTTGTAGACATAATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTGAGAAATCTTCCAAAAGCAAAAGCTGCTCTCACAGCTACAAGAACAGCTGCAAATGCTATTTATGTTCCTCCAGCCCAACAAGGTGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAAGAGAAGGATTACAAAACTGCTTATAGTTATTTCTTTGAAGCCTTTGAGTNTTTCAATGCTCTTGAAGAACCCAAGGCTGTCTTTAGCCTGAAATACATGTTGTTGTGTAAGATCATGGTGAGTCAAGCCGATGACGTGGCTGAAATCATATCTTCCAAAGCAGGCCTGCAATATGTTGGACCTGATTTGGATGCCATGAAAGTTGTTGCAGATGCTCATTCTAAAAGATCCCTGAATTTATTCGAGGTCGCTTTAAGAGACTACAAGGCACAGTTGGAGGACGATCCAATTGTTCACAGGCACCTGTCATCCCTGTATGATACTCTTCTGGAGCAGAACCTTTGCAGATTNATTGAGCCATTCTCAAGGGTTGAGATTGCACACATTCCTGAGCTCATTGAGCTCCCCATTGATCACGTGGAGCGAAAGTTGTCTCAGATGATCTTGGACAAGAAGTTTGTTGGGACTTTGGATCAAGGTGCCGGGTGTCTCGTCATATTCGATGATCCCAAAATCGATGCGATATACCCTGCAACTTTAGAAACCATTTCTAATATTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00911	85886	91577	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000911s00029415.1	PF01399.22	PCI	298	399	6.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.985
SRR1783600	control	2.995
SRR1783602	moderate drought stress	1.983
SRR1811619	moderate drought stress	1.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.065
DRR006520	Root Summer glycyrrhizin high producing strain	2.360
DRR006521	Root Winter glycyrrhizin high producing strain	0.415
DRR006522	Root Winter glycyrrhizin high producing strain	0.302
DRR006523	Root Summer glycyrrhizin low producing strain	2.606
DRR006524	Root Summer glycyrrhizin low producing strain	2.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.952
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.648

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.789
SRR2868004	Drought Stress (root)	5.596
SRR2967015	Control (root)	3.968

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.521
SRR9715740	Leaf	1.049
SRR9715741	Leaf	1.383
SRR9715739	Root	3.285
SRR9715742	Root	2.770
SRR9715743	Root	3.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.294
SRR8749028	MeJA induced 9h	0.541
SRR8749029	MeJA induced 9h	0.980
SRR8749030	Uninduced	0.763
SRR8749031	Uninduced	0.144
SRR8749032	Uninduced	0.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.623
SRR8400027	Control - Root	2.200