Gene detail

Gene detail information of Glyur000911s00029411.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32730.2	5.00E-72	Homeodomain-like protein
NR	XP_011035654.1	2.91E-99	PREDICTED: uncharacterized protein LOC105133380 [Populus euphratica]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	2.00E-81	Myb-related protein 3R-1
trEMBL	tr\|M5XNR5\|M5XNR5_PRUPE	2.00E-97	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20690.1}

Sequence

Transcript Sequence

>Glyur000911s00029411.1
AGGACGACTGGTCCTACAAGACGATCAAGCAAAGGAGGCTGGACAGAGAAGGAGGATAAACTTTTAATTGCTGCTGTGCAAACATTCAATGGAAAGAACTGGAAAAAGATAGCTGAATGTGTTCCAGGAAGAACAGATGTTCAATGCCTGCATCGTTGGCAGAAGGTTCTCAATCCTAATCTTATTAAAGGACCTTGGACAAAACAGGAAGATGATATGATACGAGAGCTTGTCATGACAAAAGGGAAAAAGAATTGGTCTATGATAGCAAAGTCCTTGCCTGGCCGCATAGGCAAACAATGTAGAGAAAGGTGGTATAACCATTTGAATCCTGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTGACTCTTATCAAGGTTCACCAAGTATATGGGAATAGATGGGCTGAAATAGCCAAGTTTCTACCTGGAAGGAGTGAAAACTCTATCAAGAATCATTGGAACGGCTCTGTGAAGAAAAAGGCCAATTTAAATGCCNCTATGTGTGCTTCTATGTACAGTTCTGATTTTAATGCTGAAGGTAAAATGACTATTGCCAAACCAAGTTCTGAGGAGAATGTGCCTCTGGACCAAAGAGTAGATACCAATCTGAGTCTTGGAACCATGTATGCAAGAGAAAATCAAGCACAATCTTTGGATTCCGAAACTCGAACCGATGATGAGTGTCATACAAAACCACAATCTACAGCTGTCCTGAATGAAACAAGTAATGAATCTTGTGAAGGTGCTGCTGGGAAAACTTCTCCTGTGAGATCTGAGGCCAATATTGTCTCTATNGTAAGTGCTGAAACTCCTAAGAGTGGTTCATTGCGCTACAAGCCACTTCAGCTTAAGGATTTGGACATTCTTTCAGAAACTGGAAGGTTACCAACCACTGACATCTATACACAGAAAACTTCAATTCCTAATTCCTTTTATAATAACATCCAAGCAAACTATACAGAAGGGATGTTTGTTGATTGTACAAGCCCAGAAGCTATATTAAGGACTGCTGCAAAGAGCTTTAAAAACACTCCATCTATCATGAAAAAATTTTCAATGCAACAGTTTGGTTATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00911	52732	55101	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000911s00029411.1	PF00249.26	Myb_DNA-binding	11	57	1.30E-16
Glyur000911s00029411.1	PF13921.1	Myb_DNA-bind_6	66	123	8.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.073
SRR2868004	Drought Stress (root)	0.118
SRR2967015	Control (root)	0.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.029
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.062
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.063
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.106
SRR8400027	Control - Root	0.000