Gene detail information of Glyur000911s00029407 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32690.1 | 1.00E-73 | hemoglobin 3 |
| NR | AFK41116.1 | 2.06E-112 | unknown [Medicago truncatula] |
| COG | YP_006440763.1 | 4.00E-54 | globin [Turneriella parva DSM 21527] |
| Swissprot | tr|Q67XG0|GLB3_ARATH | 5.00E-93 | Two-on-two hemoglobin-3 |
| trEMBL | tr|G7I4F4|G7I4F4_MEDTR | 8.00E-113 | Uncharacterized protein {ECO:0000313|EMBL:AFK41116.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00911 | 24173 | 27336 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000911s00029407.1 | PF01152.16 | Bac_globin | 26 | 143 | 4.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.300 |
| SRR1783600 | control | 27.229 |
| SRR1783602 | moderate drought stress | 35.454 |
| SRR1811619 | moderate drought stress | 35.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.972 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 48.806 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 77.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 76.248 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 174.063 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 173.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.637 |
| SRR2868004 | Drought Stress (root) | 49.074 |
| SRR2967015 | Control (root) | 42.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.156 |
| SRR9715740 | Leaf | 42.651 |
| SRR9715741 | Leaf | 50.331 |
| SRR9715739 | Root | 14.582 |
| SRR9715742 | Root | 25.658 |
| SRR9715743 | Root | 21.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.491 |
| SRR8749028 | MeJA induced 9h | 46.502 |
| SRR8749029 | MeJA induced 9h | 74.990 |
| SRR8749030 | Uninduced | 75.893 |
| SRR8749031 | Uninduced | 61.952 |
| SRR8749032 | Uninduced | 63.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.517 |
| SRR8400027 | Control - Root | 51.648 |