Gene detail

Gene detail information of Glyur000910s00020580

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51660.1	4.00E-123	mitogen-activated protein kinase kinase 4
NR	XP_003604135.1	0	Mitogen-activated protein kinase kinase [Medicago truncatula]
COG	YP_006416616.1	1.00E-31	serine/threonine protein kinase [Aequorivita sublithincola DSM 14238]
Swissprot	tr\|O80397\|M2K4_ARATH	3.00E-164	Mitogen-activated protein kinase kinase 4
trEMBL	tr\|G7JVJ5\|G7JVJ5_MEDTR	0	MAP kinase kinase {ECO:0000313\|EMBL:AES86332.1}

Sequence

Transcript Sequence

>Glyur000910s00020580.1
ATGAGGCCGATTCAACTGCCACCTCCCACCGCCGCCTNAGGCACCGGTTCCCCAAACAGCAGCACCAGCAACAACAACCACCGCGAGAATCAGCAGCCGCAGCCGCGTCCACACCGCCGCCGTAAGGACCACCTAACCCTACCGCTTCCACAGCGCGACACAAACCTAGCGGTGCCGCTTCCGCTTCCTCCGTCAAGCGGAGGAAGCGGAAGCGGTAGCGGCAGCGGAGGAAGCGGAGGAGGATCGAGCCATCAGGTGCAGCAGCAGCAGCAGCAGCAGCAGATCCCGTTCGTGGAACTCGAGAGGCTGAACCGAATCGGTAGCGGAAGCGGTGGAACGGTGTACAAGGTGGTACACAAAGTTAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGACACCACGAGGAGTCGGTGCGGCGACAGATCCACCGTGAGATCCAGATCCTCCGTGACGTGGACGATCCAAACGTGGTGAAGTGCCACGACATGTACGACCACAACGCGGAGATCCAGGTTCTGTTGGAGTTCATGGACGGAGGCTCTCTCGAAGGAAAACACATCCCGCATGAACAAAACCTCGCTGACGTGGCACGCCAGATCCTCCGTGGTCTCGCTTACCTGCACCGGCGCCACATCGTGCACCGCGACATAAAACCGTCGAACCTGCTGATAAACTCGCGNAAGCAGGTGAAGATCGCGGACTTCGGTGTGGGTCGGATCCTTAACCAAACGATGGATCCGTGTAATTCCTCTGTAGGGACGATAGCTTACATGAGTCCAGAGAGGATTAACACGGACATCAACGATGGTCAATACGATGCGTACGCTGGGGATATATGGAGTCTTGGGGTTAGTATATTGGAGTTTTATATGGGGAGGTTTCCGTTTGCGGTTGGTAGGCAAGGGGATTGGGCGAGTCTCATGTGTGCGATTTGTATGTCTCAACCACCGGAAGCACCACCNAGTGCTTCGCCGGAGTTTAGGGATTTCGTTTCGAGGTGTTTGCAGAGAGATCCTTCTAGAAGGTGGACTGCTTCTAGGTTGTTGGTTCACCCTTTCCTTGCTGGAACCGTTCCTCATCAGAACCAACCCACTCCAAATCTTCACCAGTTACTACCTCCTCCACCGAGATCACTTCCTTCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00910	104124	105272	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13413	MKK4_5	EC:2.7.12.2	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075
			Plant-pathogen interaction	map04626

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000910s00020580.1	PF00069.20	Pkinase	101	355	2.30E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.501
SRR1783600	control	89.292
SRR1783602	moderate drought stress	77.267
SRR1811619	moderate drought stress	71.210

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	150.684
DRR006520	Root Summer glycyrrhizin high producing strain	150.922
DRR006521	Root Winter glycyrrhizin high producing strain	54.609
DRR006522	Root Winter glycyrrhizin high producing strain	53.442
DRR006523	Root Summer glycyrrhizin low producing strain	167.476
DRR006524	Root Summer glycyrrhizin low producing strain	155.472
DRR006525	Leaf Summer glycyrrhizin high producing strain	88.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	88.737

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	89.541
SRR2868004	Drought Stress (root)	116.768
SRR2967015	Control (root)	95.855

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	259.752
SRR9715740	Leaf	261.365
SRR9715741	Leaf	280.931
SRR9715739	Root	572.225
SRR9715742	Root	330.781
SRR9715743	Root	383.351

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	90.333
SRR8749028	MeJA induced 9h	78.866
SRR8749029	MeJA induced 9h	70.669
SRR8749030	Uninduced	76.404
SRR8749031	Uninduced	45.580
SRR8749032	Uninduced	76.325

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	125.151
SRR8400027	Control - Root	164.619