Gene detail

Gene detail information of Glyur000910s00020570.2

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G78900.2	vacuolar ATP synthase subunit A
NR	NP_001242061.1	V-type proton ATPase catalytic subunit A-like [Glycine max]
COG	NP_276090.1	V-type ATP synthase subunit A [Methanothermobacter thermautotrophicus str. Delta H]
Swissprot	tr\|P13548\|VATA_VIGRR	V-type proton ATPase catalytic subunit A
trEMBL	tr\|D7EYG6\|D7EYG6_SOYBN	V-H(+)-ATPase subunit A {ECO:0000313\|EMBL:ABU87506.1}

Sequence

Transcript Sequence

>Glyur000910s00020570.2
AAAACAGAGTAGTAGTAGTAGTAAACATATCACGGTTAGAAAATGGAAGGAAAGAGCGTCCCCAACTCCACTCCACTCTGCCATACAGGTGTCCGCAGCGGATCAATTCAAATAAATCAGCGCAACCCAGTCTCTCTCACACACATAACATAAGTTGCAAATCCATATACACACTCAAAACTCGAAGAGCATTCTCTCTCTCTCTCTCTCTCTCTCTCACTGATTGTGTGGATCTTGTGTTGATCGAAACCCTTGGGTTTTGATCCTTTGTCTCCTCTTCACTCAGATCTTGAAATTCATTCATCCATCTCCGATCTGAAAAATGCCTGCCGTTATTGGAGATCCCATGACCACCTTCGAGGACTCCGAGAAGGAGAGCGAATACGGTTACGTTCGCAAGGTATCTGGACCGGTGGTGGTTGCAGTTGGCATGGCTGGGGCTGCTATGTATGAACTGGTCCGTGTTGGTCGTGACAATCTCATTGGTGAAATTATTCGCCTCGAAGGGGACTCTGCTACCATCCAAGTTTATGAGGAAACGGCCGGTTTAATGGTTAACGATCCTGTACTACGGACACACAAGCCTTTGTCCGTGGAGTTGGGACCTGGAATATTGGGAAATATTTTTGATGGAATTCAGAGGCCTCTGAAAACTATTGCTAAAAGATCCGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCTGCACTTGACAAGGATATCCTTTGGGAATTTCAGCCTAAGAAAATTGGGGAAGGAGACCTATTAACCGGTGGAGACTTATATGCTTCTGTTTTCGAGAACAGTCTAATGCAACACCATGTTGCACTTCCGCCTGATGCCATGGGAAAGATTACCTACATTGCACCACCTGGCCAATATTCCTTGAAGGACACAGTGTTGGAGCTTGAGTTTCAAGGCGTCAAAAAGAAGTTCACGATGCTTCAGAGTTGGCCTGTACGTACACCAAGGCCTGTTGCATCAAAACTGGCAGCTGATACTCCTCTCCTTACTGGTCAGCGTGTTCTTGATGCACTTTTCCCCTCAGTTCTTGGTGGGACTTGTGCCATACCGGGAGCTTTCGGTTGTGGCAAAACAGTCATTAGTCAGGCTCTTTCTAAGTATTCAAACTCTGATACTGTTGTTTATGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTTCTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGTCGNGAAGAATCTGTCATGAAGCGTACAACACTGGTGGCTAACACTTCAAACATGCCAGTGGCTGCCCGTGAAGCTTCAATTTATACAGGAATCACATTAGCCGAGTATTTTAGAGATATGGGTTATAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGAAGACTGGCGGAAATGCCTGCAGATAGTGGTTATCCTGCTTACCTTGCCTCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTGAAATGTCTTGGAGGTCCTGAACGGACAGGTAGTGTAACAATTGTTGGTGCTGTTTCTCCACCCGGAGGAGATTTCTCAGATCCTGTGACATCTGCAACCCTCAGCATTGTTCAGGTTTTCTGGGGCTTGGACAAAAAGCTTGCTCAGAGGAAGCACTTTCCATCTGTGAACTGGCTTATTTCTTATTCAAAGTACTCAACGGCACTCGAATCCTTTTATGAGCAATTTGATCCAGATTTCATAAACATTAGGACAAAGGCTCGTGAAGTTCTGCAAAGAGAAGATGATCTGAATGAAATTGTCCAGCTAGTGGGCAAGGATGCTTTAGCTGAAGGAGATAAGATCACCTTAGAAACCGCAAAACTTTTGAGAGAGGATTATCTTGCTCAAAACGCTTTTACACCATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCTACAATTTGGCAAATCAGGCAGTAGAGAGGGGAGCTGGTACTGAAGGTCAGAAGATAACTTACACCCTTATCAAGCATCGTTTGGGAGATCTCTTCTATCGTTTAGTGTCTCAGAAATTTGAGGATCCAGCTGAAGGNGAAGATGCTTTGGTTGCCAAATTTAAACAGTTACGCGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGATGAAACCCGATAATTGAAGATTGCAAGTTTGCTCAAGTATTGTCTTATTCCAATTGTAAGAGGCAATCTAGTATCCAGTGGTAGCAACGTCCTTAGTGTCGATTCATTCATATCACATTCCTTTCTTTTTCTTGGTGCTTGTTTGGCTTTTGATCTAGTTGTATGTGTAGCTATAATCATGTCTTTCAGTCATCCTGTTTTTTTTCCTCGAGAATAAGAGACTAGACATTCTCTTTCAATATGTATTTATGCGAATAAATTTATTTTAGAACATGAAGTGCCTGCGGGCATGTGGATTCTGGATTCATAGATGGAAATTGTGGGGACATGGACTATCCGAATCATGTATTTCATGGATGGGCTCGACCTTGTATCATTGTGTATTTGGAAGATCTTGTCAAACTTTTGCAGACAATAAAATTTAGAAGCCGTAATATTTTAATGAGGATTTTTTATCCCCCCTTTTTCCATTCGTGCATGGAGTAAACTATATTTAGTTTTGCTCGCGTATGTAGTGCAAAACTAATTAATGCGTTCATTTCGTTTGTATCTATGGTTTCACAAATTTGTATTCAGGAATGCTTTTTTGGTCGTAGTATTCATTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00910	25508	31458	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02145	ATPeV1A, ATP6A	EC:3.6.3.14	Oxidative phosphorylation	map00190
			Oxidative phosphorylation	map00190
			mTOR signaling pathway	map04150
			mTOR signaling pathway	map04150
			Phagosome	map04145
			Phagosome	map04145
			Collecting duct acid secretion	map04966
			Collecting duct acid secretion	map04966
			Synaptic vesicle cycle	map04721
			Synaptic vesicle cycle	map04721
			Rheumatoid arthritis	map05323
			Rheumatoid arthritis	map05323
			Vibrio cholerae infection	map05110
			Vibrio cholerae infection	map05110
			Epithelial cell signaling in Helicobacter pylori infection	map05120
			Epithelial cell signaling in Helicobacter pylori infection	map05120

Gene Ontology

biological_process

GO:0015991 ATP hydrolysis coupled proton transport

GO:0015992 proton transport

GO:0046034 ATP metabolic process

cellular_component

GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain

GO:0033180 proton-transporting V-type ATPase, V1 domain

molecular_function

GO:0005524 ATP binding

GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances

GO:0046961 proton-transporting ATPase activity, rotational mechanism

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000910s00020570.2	PF02874.18	ATP-synt_ab_N	25	85	6.40E-13
Glyur000910s00020570.2	PF00006.20	ATP-synt_ab	231	458	2.40E-110
Glyur000910s00020570.2	PF00306.22	ATP-synt_ab_C	478	619	3.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	78.433
SRR1783600	control	79.072
SRR1783602	moderate drought stress	55.167
SRR1811619	moderate drought stress	54.990

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	124.448
DRR006520	Root Summer glycyrrhizin high producing strain	123.106
DRR006521	Root Winter glycyrrhizin high producing strain	138.100
DRR006522	Root Winter glycyrrhizin high producing strain	134.680
DRR006523	Root Summer glycyrrhizin low producing strain	100.414
DRR006524	Root Summer glycyrrhizin low producing strain	100.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	76.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	76.427

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	241.082
SRR2868004	Drought Stress (root)	177.748
SRR2967015	Control (root)	167.627

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	121.616
SRR9715740	Leaf	113.713
SRR9715741	Leaf	129.671
SRR9715739	Root	72.628
SRR9715742	Root	131.735
SRR9715743	Root	119.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.276
SRR8749028	MeJA induced 9h	120.841
SRR8749029	MeJA induced 9h	81.865
SRR8749030	Uninduced	61.703
SRR8749031	Uninduced	44.395
SRR8749032	Uninduced	40.310

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	164.633
SRR8400027	Control - Root	158.034