Gene detail

Gene detail information of Glyur000910s00020567

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46910.1	4.00E-83	Plastid-lipid associated protein PAP / fibrillin family protein
NR	XP_007135860.1	2.41E-157	hypothetical protein PHAVU_010G164100g [Phaseolus vulgaris]
Swissprot	tr\|Q8W4F1\|PAP10_ARATH	8.00E-123	Probable plastid-lipid-associated protein 10, chloroplastic (Precursor)
trEMBL	tr\|V7AQM0\|V7AQM0_PHAVU	9.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:ESW07854.1}

Sequence

Transcript Sequence

>Glyur000910s00020567.1
CAACAATTACAGGAATTTTAAATATCCATATTTTGAATTTTCCATTTTGTGAGCGAGAACAAGCAAGAGAGAAAAGGATAATAAAGCAAAATTGTGTGTTGGGAAGAATGTGGGTGTAAGGAGCCGAGAGAGAGAGAAGCTTGGCTTGGCATTGCGGAACTTGACGAAGGGAAAAAGGAGTGGATTAGTCTGGTGTTGTGCTTGGTTGCTGGAATGGAGTTGGCTTTCCATTCACCCTTCTACCCTCCTTCACTGTCTACTGCTACTACTGGGAGGCCCAACAATTGCAATTACAATTACAATTACAATTACAATTGCAATTGCAATTGCAAGGTTTGGCCTTTGAATTTGAAATCAGTCCCCAGGAAACTGTCCATTTCCAATTCCATGGCCACGATGCCACCTGCTACTCCTCAGGCATATGATTATGAGTTAGAGAACAAAAAGCATAAGCTGTTGACCTCTGTCCAAGACACACAGAGGGGTCTCTTAACAACCCCTGATCAACGCTCTTCCATCGAGGAGGCTCTCGTGAATGTGGAAGGGTGCAACATGGGTGACCCAATCGACCTGGCCAAGTTGGATGGAACATGGCGCCTTCAATATACCTCCGCTTCTGATGTTCTCATTCTTCTCCAAGCTGCTGCTACCCTTCCTTTCTTTCAAGTTGGTCAGATCTTTCAGAAATTTGAATGTCGGGATAACTCTAATGGAGGTGTTATCCGCAATGTTGTCCGATGGAGTATTCCAAATTTGTTAGAGGAACAAGAAGGTGCTACATTGCTTGTATCTGCCAAGTTTGCTGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGATAACAGTTCAAGACATAAATATTAGTGAACAGCTGCAGGCTCTAATAGCTCCAGCACTACTACCTCGATCTTTTATAAGTTTGCAGATCTTGCAATTTCTCCGTACTTTCAAAGCTCAAGTGCCCGTGAGGGATCCAGGAAGGGAATCGGTAGGAGGACTATATTACCTTAGTTATTTGGATGATAATATGCTTTTGGGTCGTGCTGTTGGTGGAGGAGGGGTTTTTGTGTTCACCAGAGCCCAATCACTCTACTGAAGTGAAGAGCATTGAGCTGCAGTTAAAACTTGTACTGCTCCCAAGACAAGAGCCATCATTTGATTTTGTGGAATTGGCCACACNGAGAGCAAGAAATAGTTTTGATGCNTATAGCCCACAAGGAAATCTCCTCAGTCAATAAGGCTATTATATGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00910	12909	16874	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000910s00020567.1	PF04755.7	PAP_fibrillin	77	288	2.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.903
SRR1783600	control	7.889
SRR1783602	moderate drought stress	8.391
SRR1811619	moderate drought stress	8.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.887
DRR006520	Root Summer glycyrrhizin high producing strain	7.448
DRR006521	Root Winter glycyrrhizin high producing strain	1.704
DRR006522	Root Winter glycyrrhizin high producing strain	1.795
DRR006523	Root Summer glycyrrhizin low producing strain	7.218
DRR006524	Root Summer glycyrrhizin low producing strain	6.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.302
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.508
SRR2868004	Drought Stress (root)	10.526
SRR2967015	Control (root)	10.005

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.724
SRR9715740	Leaf	39.289
SRR9715741	Leaf	27.812
SRR9715739	Root	8.548
SRR9715742	Root	7.174
SRR9715743	Root	5.789

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.627
SRR8749028	MeJA induced 9h	7.186
SRR8749029	MeJA induced 9h	3.036
SRR8749030	Uninduced	1.743
SRR8749031	Uninduced	1.030
SRR8749032	Uninduced	1.541

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.674
SRR8400027	Control - Root	13.294