Gene detail

Gene detail information of Glyur000910s00020565

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20260.1	1.00E-120	Protein of unknown function (DUF1666)
NR	XP_004507574.1	0	PREDICTED: uncharacterized protein LOC101490847 isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072UGG4\|A0A072UGG4_MEDTR	0	DUF1666 family protein {ECO:0000313\|EMBL:KEH28521.1}

Sequence

Transcript Sequence

>Glyur000910s00020565.1
ATCCCATCCCCCATTACATTAATGCAAAAAAAAACCTCATTCATTTTTATATTACGTTTATTCTGTCAGTTATGCTTTTTTTTTTATTGGGAAATGAGATTTCAAACAAATCAGAGTCCTCACTCTAGTCTCTCACATTTATTGCATTTTTTTGTTCATTTTTTAAAATTTTTCTAATTTCTAGTTCCACTCACTGCACTGTTCTTCTCTGCAGTCCCTCCCTAGGGTTTTCTCTTTGCAATTTCTGCTCTTTCCCCTTCGTCTCTTCTGCTTCTGCTGGCTTTCCTGATATGTCACATTGATCTTTTTCTTGGTATTGGCTACCATAGAAGAAGAGAATCGCCTTCAGGACTTCAATGTAGGAAGAGTATGCATGCAAATGCAAACTAGGTGAGACAGGGAAGAGAGAGAGGTTGTCTTGTCGNTGGCTCTGATCACTGTAAATGCTGCTCAATGCTGTCCCAGTTTTATGCCGAAGGTTTTGATCTAAAACGTTTGAAATATTGGGCTTGAGCATAGAATAGTTTGGTTTTGAAAGGTGAGGTGGTGAAGCATGGATTTTTTGAAAATCAAGAAATTCAGGAAATCTCAGAAAGCAGATGGAGAAAAGGAGGCAGACAAGGCAGTGCCAGAGCCTGAGGAGCTGAAGCCTAACACAGGCGGTCCTGATCAGTGTAAATCAGAAAATGCAGATTCTGCTGGTGAAGCTGAGGACGACGACGATTTCATTACCAATGAGGTAAAGAGGAGGCTTAAAGAACTGAGAAGAAACAGTTTTATGGTTTTGATTCCTGAGGAAGATTCCTGCCCGGAGGAGGGCGAGGAGGATGAAGAGGAAGAGGGAGAGACGGTCTCAAATGAATGGAGGGATGTGGAGGCAGAAGGTCAGCAATGGTGGCGTGGCTTTGATGCTGTGTTTGAAAAGTACTGNGAAAGAATGCTATTCTTTGATCGGATGAGCATGCAGCATCTTAGTGAAGTTGGCAAAGGCTCACAGTGTACTTCAACTCCATCTCCAAGATCGACNTCAAAGAAGCTGGCTTCTCCCCTTCGTTGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGATGAGACTGAACATCTCCAATGGCCTGAAAATGATCCCTACCAGGAAATTGAAACAGCATATGTAGGTCAAATTTGCTTGACTTGGGAGGCTCTTCACTGTCAATACTCTCATATGAGTCAGAAGATATCTTGGCAACCTGAAAATGCTACCTGTTACAACCATAGTGCGCAGGAGTTTCAACAGTTCCAGGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGTCTTCGAGCTGAAATTTATGCTCGTACAAGGAACACTTTGCCTAAACTGCTTCACGTTCCTAACATACGAGGTTCAGATCATGAATTAACAGATGATTCGGATACGAGAGTTCTTGCTCCAGATCTTATCAGGATAATTGAAAACTCTATCCTTACTTTTCACCTTTTCCTGAAAAGGGACAAGAAAAAGTCAAGTGGTGTCAACCTGTTTGGAAATCAGAACCACCTTGCAACTCCTCTACACCAGGTTCAATCTATTCTTGAGAAGAAAGTGGTGAAACTGAAGGAACTGCGAAGAAGGAAGAAAGGTTGGAGAANGGATTGTTGGCCCCAAAAGCATGAGGACATTCAGCTATTGCTTGGCCTTATTGACGTGAAAATCCTATCAAGGGTTATGAGAATGACGAGGGTGACAAGAGAGCAACTGTTTTGGTGTGAAGAAAAGATGAAAAGACTTGATTTGTCAAATAGTAGGCTAGAGAGGGATCCCTGCCCCGTTCTCTTCCCTTGCTAATATCATTTCTGTATAATAAGCTCTTTTCTGTCTTTAGCTCTTTTCTGCCTGGAATGATAAGCTGCTTGCTTAGGATGTTTGGGGGAAAGAATTCTCGGATATGTATGACAACAATGAGAGGGTAAGAAGGATTTTCATTCTGTTATCTCGAATGTATTGTTGTTCTGTCAAATTTGTGGGTTTCTAGGTTCTTTTGTATAACTCTTGGTATAAACATAGTGTTAAGGATTATTCTTGTTGGTTCTTAGACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00910	3699	7740	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000910s00020565.1	PF07891.7	DUF1666	192	427	2.90E-61
Glyur000910s00020565.2	PF07891.7	DUF1666	192	427	2.90E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.208
SRR1783600	control	4.192
SRR1783602	moderate drought stress	3.085
SRR1811619	moderate drought stress	3.129

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.584
DRR006520	Root Summer glycyrrhizin high producing strain	6.498
DRR006521	Root Winter glycyrrhizin high producing strain	0.815
DRR006522	Root Winter glycyrrhizin high producing strain	0.768
DRR006523	Root Summer glycyrrhizin low producing strain	3.707
DRR006524	Root Summer glycyrrhizin low producing strain	4.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.160
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.223

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.810
SRR2868004	Drought Stress (root)	10.020
SRR2967015	Control (root)	15.710

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.654
SRR9715740	Leaf	0.737
SRR9715741	Leaf	1.200
SRR9715739	Root	3.501
SRR9715742	Root	6.604
SRR9715743	Root	5.909

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.728
SRR8749028	MeJA induced 9h	5.197
SRR8749029	MeJA induced 9h	4.984
SRR8749030	Uninduced	0.865
SRR8749031	Uninduced	0.636
SRR8749032	Uninduced	2.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.505
SRR8400027	Control - Root	18.008