Gene detail

Gene detail information of Glyur000909s00031010.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44550.1	4.00E-37	fatty acid reductase 5
NR	XP_004490308.1	5.88E-109	PREDICTED: fatty acyl-CoA reductase 8-like [Cicer arietinum]
COG	YP_001537828.1	8.00E-13	hypothetical protein Sare_3013 [Salinispora arenicola CNS-205]
Swissprot	tr\|Q93ZB9\|FACR3_ARATH	2.00E-52	Fatty acyl-CoA reductase 3
trEMBL	tr\|I1LKT9\|I1LKT9_SOYBN	5.00E-69	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G19190.1}

Sequence

Transcript Sequence

>Glyur000909s00031010.1
CTTTTGTGGAAAAAATATTAAGGGTTCAACCAGATGTAAAAAAGTTATACCTTTATTGTAAGAGCATCAAATCCTTATTTAGCTACCCAACGCTTGCAAGATGAGGTCTTTGGGAAGGACTTGTTTAGGGTGCTAAGAGATAAGTGGGGTGCAGATTTTGATGCCTTCATATCCAACAAAGTGGTCGCTGTTCCTGGAGATGTGTCTCTTGAGATGTTTGGAGTAAAAGATGTAAAGATGAGGGAAGAAATGTTGGAAGAGATAAATATAATAGTAAATAGTGCTGCCATAACCATGCTTGATGAGAGATTTGATATTGCAATGGCTNCAAATACGACGGGAGCTTTTAATGTTTTGAACTATGCCAAAAATTGTCGCAAACTAGAGGTTCTTCTTCACGTGTCTACAGCTTATGTGTGTGGAACGGCAAAAGGACTTATAACAGAGGAACCCTTCCTCATGGGTCAAACGCTAAATGCATCTTCAACATTAGACATCGAATTAGAAAAGAAGTTGATAGAGAAAAAATTGAGTGAACTCCAAACACAGGACGCCAATGAAGAAACAATCAAGCTAGCAATGAAAGAGCTTGGAATGATAAGAACTATTGACTTTTTGGTTGATGGGTATTTTAAGGGAGCGATANCAAGCTTTGTTGGTCATCCAGAGACAGTCATAGATGTGATACCTGTAGACATGGTGATAAATTCTATGGTCATAGCGTTGNTGGCTCATTCTAAGAATCTTTCCAAAAATTTGATATACCATATTGGTTCTTCATTGAGAAATCCGTTCAAAATGTCCGATCTTCAAGATGTCATGTATTGTTATTCTAAAAAAAATCCATGGGTAGAAAAGTTACGAGTGGTAGCAAAGAGAGTTGAAGAAGGGGGATTTGACTTTGATCCCAAAAATATTAATTGGAAGCACTACATGATGAATATCCATCTTCCAAGTCTGATGAAATACTCTATACGAAGTAAGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00909	92527	101290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13356	FAR	EC:1.2.1.84	Cutin, suberine and wax biosynthesis	map00073
			Peroxisome	map04146
			Longevity regulating pathway - worm	map04212

Gene Ontology

molecular_function
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000909s00031010.1	PF07993.7	NAD_binding_4	10	167	1.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.037
SRR1783600	control	0.046
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.606
DRR006520	Root Summer glycyrrhizin high producing strain	1.421
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.157
DRR006524	Root Summer glycyrrhizin low producing strain	2.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.581
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.683
SRR2868004	Drought Stress (root)	0.462
SRR2967015	Control (root)	0.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.876
SRR9715740	Leaf	1.636
SRR9715741	Leaf	1.563
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.260
SRR8749028	MeJA induced 9h	0.705
SRR8749029	MeJA induced 9h	0.947
SRR8749030	Uninduced	4.806
SRR8749031	Uninduced	3.016
SRR8749032	Uninduced	1.311

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.114
SRR8400027	Control - Root	0.308