Gene detail

Gene detail information of Glyur000909s00031001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13580.3	8.00E-83	LAG1 longevity assurance homolog 3
NR	KEH27917.1	3.86E-111	LAG1 longevity assurance-like protein [Medicago truncatula]
Swissprot	tr\|Q8W4Y5\|ASCL_SOLLC	1.00E-100	ASC1-like protein
trEMBL	tr\|A0A072UE62\|A0A072UE62_MEDTR	1.00E-111	LAG1 longevity assurance-like protein {ECO:0000313\|EMBL:KEH27917.1}

Sequence

Transcript Sequence

>Glyur000909s00031001.1
AAGTACAATTATCACAATTGGAGATGCCGTGCCTCTNATGATACAAAAGAGTCAAAGACTATTCTCTTCCTTTCCCTTATATAGAAAAAATGCTGATGTGTTCCACGCTGACAGTTGACTATTCACTGTCGCCAGCCAAGATATACTTTGTACTTTTTCCCTGATACAGGGAATAGTTAATAATTCTGCAACACTCAAGGGTTGGCTCTTTGTTTGTTTCCCGAGAAAATTTCTGAGCCAACGGATTCCATCCATCCTCAATTCAATGGCCTCCTGGCCCTGGGCTTGGGTTCAACAACTGACCTCCCTTGACTGGCAACAAGAATCCTACCCTACTTTTTGGGATTTCTCAGTTCTACCTTTGTTCGCCCTCTTCTTTCCCTCCCTTCGCTTCCTTCTCGACAGGTTCCTCTTCGAGAAAATTTCTGAGCCAACGGATTCCATCCATCCTCAATTCAATGGCCTCCTGGCCCTGGCTTGGGTTCAACAACTGACCTCCCTTGACTGGCAACAAGAATCCTACCCTACTTTTTGGGATTTCTCAGTTCTACCTTTGTTCGCCCTCTTCTTTCCCTCCCTTCGCTTCCTTCTCGACAGGTTCCTCTTCGAGCATTTCAGATTGAAATTGAAGGGGCTCTATATGTATTGTGCTGGATTTTATACATACTCCATGCTTGCTTTAGTATTTTGGGAAACGAGGCGCTCTGACTTTGGGGTTTCCATGAGCCATCATGTTGCTTCTCTCAGTCTCATTGTGTTATCCTACATCTTTAGGTTTGTTCGAGTTGGATCAATTGTTTTAGCTCTTCATGATGCTACTGATGTGTTTCTGGAGACAGGGAAAATGTCCAAATACAGNGGTGCTGAAACATTAGCTAGCTTTGCGTTTGTTCTTTTTGTTTTGTCTTGGACCATACTGCGCATCATTTGCTACCCATTCTGGATTCTTCGAAGTACAAGCTATGAACTTATTCCAACCTTAGATTTGGAAAAGCACAGGTCGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTGTTCTTCTTGCTTGTTATCAATATTTATTGGTGGGTGCTGATGCTTCGGATGCTTGTTGATCAAATCCAAGCAAAAGGAAAAGTTAGTGAAGATATTCGATCTGGTAAGTTGAGAGATATTCAGAAGATGAACATGAACATGAAGAATGAGCATGAACACAAGATTGAGTATAGTCACATTTTGTTTGAAGAGAAATGGTCTCGAGTTGTTTTACACGCACCCTGTACATCTCAAATATTGTCACGTTATATGTGGCATCAAGATGACAAAGTAAGAGATGACAATGTAAAATTCTCCAAAACTATAGTGTAAACAAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00909	26827	41587	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0005783 endoplasmic reticulum

GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000909s00031001.1	PF03798.11	TRAM_LAG1_CLN8	121	275	2.40E-30
Glyur000909s00031001.2	PF03798.11	TRAM_LAG1_CLN8	121	275	5.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.914
SRR1783600	control	9.647
SRR1783602	moderate drought stress	9.962
SRR1811619	moderate drought stress	10.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.129
DRR006520	Root Summer glycyrrhizin high producing strain	10.939
DRR006521	Root Winter glycyrrhizin high producing strain	8.289
DRR006522	Root Winter glycyrrhizin high producing strain	7.567
DRR006523	Root Summer glycyrrhizin low producing strain	9.599
DRR006524	Root Summer glycyrrhizin low producing strain	9.519
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.818
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.813
SRR2868004	Drought Stress (root)	22.105
SRR2967015	Control (root)	21.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.697
SRR9715740	Leaf	20.110
SRR9715741	Leaf	23.580
SRR9715739	Root	3.842
SRR9715742	Root	9.610
SRR9715743	Root	8.290

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.582
SRR8749028	MeJA induced 9h	2.296
SRR8749029	MeJA induced 9h	3.632
SRR8749030	Uninduced	2.504
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	2.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.210
SRR8400027	Control - Root	21.523