Gene detail

Gene detail information of Glyur000908s00027283

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G57300.3	2.00E-106	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	KHN38004.1	4.26E-164	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial [Glycine soja]
COG	YP_004678711.1	9.00E-78	ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Hyphomicrobium sp. MC1]
Swissprot	tr\|Q9LVC8\|COQ5_ARATH	1.00E-132	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial (Precursor)
trEMBL	tr\|I1KVG9\|I1KVG9_SOYBN	2.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G22890.1}

Sequence

Transcript Sequence

>Glyur000908s00027283.1
CAAAACTATTTTTTAAAAAAAAAATGCAAAAACACAGTCAAACAGGCCGTAGGTTTAGAGTCACTCTTCCCTTCTTCTTCTTCTTCTCCTCCTCCATCCTTTCACTCCGGCCACCGCCGCGTCCTGTCGTCTTCACTCAAGTCCAGAGCATCGTTCACGAGCGTCCAGCCACCGCGTCGTTCAGCCACCGTCGCGTTCACGAGCCACCGTCGCGCGTCCCAGCCGCCCTCCACCAGCCACCGTCTCGCGTCTAGCTTTGAACAACAATCATATTGATGGCTTTGAGAAAGGTCACTACAAGTTTGGGGAATAAACTCTTCCCCGCGTTATGCTCTTCCACTTCCAGGCTACTACTCCACTCCCATGCCACCAGTTTCGGATTCAAACAAGTAAAGGAAGAAGAAAAGGCCAACATGGTCGGTGGTGTATTCACGAGCGTAGCGGCAAAATACGACTTCATGAATGATCTAATGAGTGCTGGATTGCATAGATTGTGGAAGGATAGGCTTGTTTCCATGCTGAATCCTTTTCCTGGAATGAAGCATCTCGATGTGGCTGGTGGCACAGGGGATGTTGCTTTTAGAGTCTTGGAGAACATTAACAGAGTTAAGCAAAGAGGGGTGAGAGATGTTTTTCAAGGTGCTTTAGAGGCAGCAACTCAGATATATGTCTGTGACATTAACCCTAACATGTTGAATATGGGCAAACAACGGGCTTCGGAGAAGGGTTTTGGTGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTACACTATTGCATTTGGGATAAGGAATGTTACTCACATAGAGAAAGTCTCAGTGAAGCTCATAGGCCGATGGCAATCGATTGAATTTGTGGTTAATCCACTGGTATTGAAACCCGGAGGCAGGTTCCTTTGCCTTGAACTAAGCCATGTTGTTATTCCATACATGGGAGAGCTGGTTGCTGGTGATCGGGAATCGTATCAGTACTTAGTTGAGAGTATCCGNCGTTTTCCCTCACAGGAAAAATTTGCATCGATGGTTGCGGATGCAGGGTTCCAGAAAGTAGAGTATGAGAATCTAGTTGGGGGAGTGGTTGCCATCCACTCAGGGCTGAAAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00908	85839	90423	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06127	COQ5	EC:2.1.1.201	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000908s00027283.1	PF01209.13	Ubie_methyltran	42	288	1.70E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.108
SRR1783600	control	17.124
SRR1783602	moderate drought stress	19.832
SRR1811619	moderate drought stress	20.640

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.807
DRR006520	Root Summer glycyrrhizin high producing strain	31.907
DRR006521	Root Winter glycyrrhizin high producing strain	23.174
DRR006522	Root Winter glycyrrhizin high producing strain	23.705
DRR006523	Root Summer glycyrrhizin low producing strain	30.873
DRR006524	Root Summer glycyrrhizin low producing strain	31.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.697

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.485
SRR2868004	Drought Stress (root)	29.295
SRR2967015	Control (root)	25.625

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.209
SRR9715740	Leaf	20.435
SRR9715741	Leaf	17.484
SRR9715739	Root	17.484
SRR9715742	Root	18.533
SRR9715743	Root	16.554

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	97.052
SRR8749028	MeJA induced 9h	62.742
SRR8749029	MeJA induced 9h	110.577
SRR8749030	Uninduced	73.184
SRR8749031	Uninduced	59.598
SRR8749032	Uninduced	78.069

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.508
SRR8400027	Control - Root	40.538