Gene detail information of Glyur000908s00027282 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09490.1 | 1.00E-06 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_008219669.1 | 1.85E-10 | PREDICTED: uncharacterized protein LOC103319850 [Prunus mume] |
| trEMBL | tr|M5W925|M5W925_PRUPE | 9.00E-10 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10237.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00908 | 83905 | 84333 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000908s00027282.1 | PF13456.1 | RVT_3 | 14 | 98 | 2.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.165 |
| SRR1783600 | control | 9.852 |
| SRR1783602 | moderate drought stress | 5.158 |
| SRR1811619 | moderate drought stress | 5.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.779 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.880 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.863 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.129 |
| SRR2868004 | Drought Stress (root) | 2.198 |
| SRR2967015 | Control (root) | 2.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.054 |
| SRR9715740 | Leaf | 2.529 |
| SRR9715741 | Leaf | 2.334 |
| SRR9715739 | Root | 0.636 |
| SRR9715742 | Root | 2.816 |
| SRR9715743 | Root | 2.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.334 |
| SRR8749028 | MeJA induced 9h | 20.446 |
| SRR8749029 | MeJA induced 9h | 7.524 |
| SRR8749030 | Uninduced | 3.801 |
| SRR8749031 | Uninduced | 13.729 |
| SRR8749032 | Uninduced | 4.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.840 |
| SRR8400027 | Control - Root | 6.529 |