Gene detail information of Glyur000908s00027279 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51440.1 | 4.00E-22 | Calcium-dependent phosphotriesterase superfamily protein |
| NR | AFK34069.1 | 7.93E-97 | unknown [Medicago truncatula] |
| COG | YP_004863252.1 | 3.00E-36 | gluconolactonase [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q9SD05|SSL6_ARATH | 9.00E-26 | Protein STRICTOSIDINE SYNTHASE-LIKE 6 {ECO:0000303|PubMed:10777701} (Precursor) |
| trEMBL | tr|I3S1C7|I3S1C7_MEDTR | 3.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:AFK34069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00908 | 48813 | 58772 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000908s00027279.1 | PF03088.11 | Str_synth | 103 | 185 | 1.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.846 |
| SRR1783600 | control | 0.945 |
| SRR1783602 | moderate drought stress | 4.064 |
| SRR1811619 | moderate drought stress | 4.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.904 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.560 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.689 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.945 |
| SRR2868004 | Drought Stress (root) | 0.829 |
| SRR2967015 | Control (root) | 1.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.201 |
| SRR9715740 | Leaf | 99.723 |
| SRR9715741 | Leaf | 86.742 |
| SRR9715739 | Root | 1.472 |
| SRR9715742 | Root | 5.007 |
| SRR9715743 | Root | 4.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.113 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.074 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.909 |
| SRR8400027 | Control - Root | 3.054 |