Gene detail

Gene detail information of Glyur000907s00031045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-56	NB-ARC domain-containing disease resistance protein
NR	XP_003612759.1	0	Nbs-lrr resistance protein [Medicago truncatula]
COG	YP_001516367.1	8.00E-10	hypothetical protein AM1_2038 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	7.00E-93	Putative disease resistance protein RGA4
trEMBL	tr\|G7KAY9\|G7KAY9_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES95717.1}

Sequence

Transcript Sequence

>Glyur000907s00031045.1
ATGGCATCACTTCCACTTCCTGCTACGAACCATTCATCCTCCACTCCCGCTACCCATCCATCAAAACCAATGGATGTAGCTCTTCTTGGCGAAACCATTGACACAATCCTCAAAGAGCTACCTAACCTTGCAACAAACCCAACCTCAGGTACTACTGGGCTGTCCCAANGTGACACCGAACAGCTTGCAAAGTCGCTCCAAGAAACCAAAGCGGTGGTCGACAGGGAGAAGAAGAAGAACCTCGTCCAAGGTGATGATCAGGAAGTTCTGAATTGGCTGCGGGACCTCAAGACCGTGGTCAACGATTTGAACGACTTGGTAGAGGAACTCTCCTCCAATAATAATGCTTCTTCTTCTTCTTCTTCTTCTCCGCCTCAGGAGAAGAAATTCCCCTTCTTAAAACCCAACCCTTTTAAGAGTCGCCACAAAGTCATCACTTCAAAAATCAAGAAAGTCATAGACGGCCTCAAAGACGTTGCGACCAAATTGCCCACGCCGTCTGAAGTGGCGAGTAAGAAGGAGACGACAAAGTTGGACACTAAAATCGAGAAGAAGGAGGAAACGGTTGGGAGAGAGAAGGAAAAGAACGAAATCATAGATCAACTCATCTTGCCACTGACCAAAACTGAGGGAAGTAACGTTGTTGTTCCTGTTGTTAAGGTGGTCGCCGTTGTCGGGGTTGCTGACATAGGGAAGACAACACTTGCCCGTCTCATTTGTGGGGATGAGCGAGTCGAATCTCATTTTGGTTCGAAAATTTGGATTGATGGAACCGCTGACGTGGAATCCATCGCNGAACCTGTCACTGAGTCTCCACCTACGACGGACGGAAANGGCTACCTNGTTGTGGTGGACNATTTGAGCACTGAGATTGNTGACGAATGTCTCTCAAAGTTGCAGCAGATAATAAACGCTGTTGCAACTGGTCTACCCTGTGTCGCAGCAATTCTCATAACCACGCGTAGCAAACTCGTGGCCAATAAGATTACCGCTAGCACACGCAGCAAATACAACATTGCTGCTGCTGTTGCTACGGTTAAGCCGCATGTTTTGCAGGGGCTTAACGAGAAGGACTCTTTGTCTCTGTTTCGGAAGATTCGTGGACCAAGTTCNACGGAAGACATGGAACAGAAGATTGTGATGGATTGTGGTGGAGTCCCTCCATGGATCATAATTGCAGCNAGATTGCTTGAAAATCGTAGTACCCCTCTTGCTACCGAAGCAGATGTTGTTGCATTCAAGGAGGAGTTTTTAAGAAAACTCAAGTTCAAATACTATGACAAATTCTCAAGGCTTCAGAAGCTCTGTTTTGCTCATTGTTCGTTGTTTCCACGAGACCATTTCATCATTGCTGATAAATTAGTTCGTCTCTGGATAGCTGAAGGCTTTCTCCTTCTCAATTCAACAATTGTGGAAGAGATTTTCAGGGACTTCCTAATTGGGAAGCCAATTTTCAAAGACGTGGAAGAGGACGAGTGTGGGGTTGTGAAGAGGCTCAGAATACAACCCATAATGCACGACCTCGCAAGCTTCGTTGCAGATCACGAGGAGAACGTTACCGTTGATCCAGACGGGGAGAAAGTTCACGAAGGAGTCCTTCGAGCTTCCTTTGATTTCAGCCTCGACGTTTGGCGCGGAATCCCAGTTTCTCTGTTTGAAAAGGCAAAGAAACTTAGAGCCATCCTCTTGTGGAAGACACACACGCTGCCCACAAAGGAAATGAAGATGAGCGTTTCCACCTGTGAGAAAATCGTCAAGAGTTTCTCTAAGACCCTGCGCATGTTGGATCTCCATGACTTGGGCATGAAGACACTTCCCAGCTCCATTGGGGAGCTAAAGAACGTGAGGTACCTCGACCTTTCCCTCAATAACATGGAGAAGCTACCCGGTTCAATTACAAAGCTCACCAACTTGCAAACATTGAAGCTTTCACAGTGTTACCTCCTCAAGGAACTCCCCAAGAACATTGAGGATCTAGTTAGCCTCAAGCATCTCGAGATAGAGGGATGTTTGGCTCTCACTCACATGCCTCGCAAGATTAACAAGTTGAGTTCTACCTTACAGACTCTGTCTCTCTTTGTGGTTAGCAAGGATTACCACTTGGGAGGCCTTGGGGAACTTGCAAGCCTCAACAACTTGAAGGGCCACTTGGAAATTCTCCACCTGGAACGAAACTCGAACCTCTCAAAGCAGGACAAGTGTCTCGAACGGAAAGAACACCTCCAGCGACTGACATTGAGATGGGATCACGAGGACGAAGAGGAGGAGGATGGCATGGAGAAAAAGAGAGATGAGAAATCACTGGAATCTCTTGAGCCTCACACTAATCTAAGAGGGTTACTCATTGTGGGTTACAAAGGTGTCACGCTTTCTANTTGGCTTTCTTCCATGAAATGCCTTGTTAAGCTAAGCCTCTACGACTGTACCAGTTGCAAGTTTCTCCCACCAAAACTGGATCAACTCCCAAACCTCAGGATTCTCGAGATTCTAAGGCTTGACAATCTGGAATTCATTGCAGAAAACGATACTAACGACAATGACAAAGACAAACCCGCATNGTTCTTTCCATCCCTAGAGGAACTAACAATCTCGGATTGTCCGAGACTCACGGGTTGGTGGAAAGAGGATAAAAATGGAACAAATTTNCCAATCTTTCCTTGCATTTCAAAACTGCATCTTTCTTATTGCCCGAAGCTAATTTGCATGCCTCTGTTTCCGGGTCTTGATGAGGAGCTTGTTCTCGTGGGTTCAAGCATAAAACCACTGCAAGCTATAAGAGTTCATGGGAAAACAAGGGGTATTCCATTTTCCAAATTGAAGTCCATGCAAATTGCCACCATTGAGGAGCCTTCACCACCACAGGAGTGGCTTCAATACTTGAGTTCTCTTGAGAAGCTTCACATTCGAGAGTGGAAGCAGTTAGCTACTCTTCCCAGTGGCTTCGATCATCTGAGCTCACTCCAGAGTCTCACCATTGAGAACTGTCCAGAGCTTGACCTTAACAGTACCTCCAGCAACGAATGGAAGGGTNTGAAAAACCTGCGTTCTCTCGTCATAAAGGAGAATCCTAAACTCAAGTCGCTTCCAGAAGGGGTTGAAATGGTTACCTCTCTGCAGGATCTTGAGCTTCATAACTGTCCTGAGTTGGCTTCTTTGCCTGATACCATGAGCAACCTCAAATCACTTGGGAGGCTTGTGTTATCTGAATGCAATAAGCTGGCTTCGCTACCTAAAGGGTTGAAGCTGAACGAGTCTCTGGATACTTTGATTGTTTTGGACTGTGCCTTGTTGATGCCACGGTGTCAGCCGAATACTGGTGATGATTGGCCACAGATTTCACATATCAAAAACAAACTTGTGAGGGAAAATTCTCGTGACATATAA

Protein Sequence

>Glyur000907s00031045.1
MASLPLPATNHSSSTPATHPSKPMDVALLGETIDTILKELPNLATNPTSGTTGLSQXDTEQLAKSLQETKAVVDREKKKNLVQGDDQEVLNWLRDLKTVVNDLNDLVEELSSNNNASSSSSSSPPQEKKFPFLKPNPFKSRHKVITSKIKKVIDGLKDVATKLPTPSEVASKKETTKLDTKIEKKEETVGREKEKNEIIDQLILPLTKTEGSNVVVPVVKVVAVVGVADIGKTTLARLICGDERVESHFGSKIWIDGTADVESIAEPVTESPPTTDGXGYLVVVDXLSTEIXDECLSKLQQIINAVATGLPCVAAILITTRSKLVANKITASTRSKYNIAAAVATVKPHVLQGLNEKDSLSLFRKIRGPSSTEDMEQKIVMDCGGVPPWIIIAARLLENRSTPLATEADVVAFKEEFLRKLKFKYYDKFSRLQKLCFAHCSLFPRDHFIIADKLVRLWIAEGFLLLNSTIVEEIFRDFLIGKPIFKDVEEDECGVVKRLRIQPIMHDLASFVADHEENVTVDPDGEKVHEGVLRASFDFSLDVWRGIPVSLFEKAKKLRAILLWKTHTLPTKEMKMSVSTCEKIVKSFSKTLRMLDLHDLGMKTLPSSIGELKNVRYLDLSLNNMEKLPGSITKLTNLQTLKLSQCYLLKELPKNIEDLVSLKHLEIEGCLALTHMPRKINKLSSTLQTLSLFVVSKDYHLGGLGELASLNNLKGHLEILHLERNSNLSKQDKCLERKEHLQRLTLRWDHEDEEEEDGMEKKRDEKSLESLEPHTNLRGLLIVGYKGVTLSXWLSSMKCLVKLSLYDCTSCKFLPPKLDQLPNLRILEILRLDNLEFIAENDTNDNDKDKPAXFFPSLEELTISDCPRLTGWWKEDKNGTNXPIFPCISKLHLSYCPKLICMPLFPGLDEELVLVGSSIKPLQAIRVHGKTRGIPFSKLKSMQIATIEEPSPPQEWLQYLSSLEKLHIREWKQLATLPSGFDHLSSLQSLTIENCPELDLNSTSSNEWKGXKNLRSLVIKENPKLKSLPEGVEMVTSLQDLELHNCPELASLPDTMSNLKSLGRLVLSECNKLASLPKGLKLNESLDTLIVLDCALLMPRCQPNTGDDWPQISHIKNKLVRENSRDI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00907	100504	103986	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000907s00031045.1	PF00931.17	NB-ARC	218	259	2.40E-06
Glyur000907s00031045.1	PF00931.17	NB-ARC	324	464	3.00E-10
Glyur000907s00031045.1	PF13855.1	LRR_8	614	670	4.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.798
SRR1783600	control	0.756
SRR1783602	moderate drought stress	0.859
SRR1811619	moderate drought stress	0.891

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.032
DRR006520	Root Summer glycyrrhizin high producing strain	0.032
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.065
DRR006524	Root Summer glycyrrhizin low producing strain	0.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.266
SRR2868004	Drought Stress (root)	9.415
SRR2967015	Control (root)	10.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.073
SRR9715740	Leaf	0.278
SRR9715741	Leaf	0.737
SRR9715739	Root	2.029
SRR9715742	Root	2.624
SRR9715743	Root	2.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.164
SRR8749028	MeJA induced 9h	0.233
SRR8749029	MeJA induced 9h	0.324
SRR8749030	Uninduced	0.306
SRR8749031	Uninduced	0.714
SRR8749032	Uninduced	0.151

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.048
SRR8400027	Control - Root	4.810