Gene detail information of Glyur000907s00031037 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32170.1 | 9.00E-23 | xyloglucan endotransglucosylase/hydrolase 30 |
| NR | XP_004512469.1 | 7.74E-51 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 30-like [Cicer arietinum] |
| Swissprot | tr|Q38908|XTH30_ARATH | 1.00E-28 | Probable xyloglucan endotransglucosylase/hydrolase protein 30 (Precursor) |
| trEMBL | tr|I3SK34|I3SK34_LOTJA | 1.00E-50 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00907 | 27698 | 28293 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000907s00031037.1 | PF00722.16 | Glyco_hydro_16 | 48 | 112 | 1.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.417 |
| SRR1783600 | control | 9.302 |
| SRR1783602 | moderate drought stress | 10.283 |
| SRR1811619 | moderate drought stress | 10.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.878 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.387 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.890 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.686 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.077 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.478 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.798 |
| SRR2868004 | Drought Stress (root) | 18.205 |
| SRR2967015 | Control (root) | 18.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.854 |
| SRR9715740 | Leaf | 21.772 |
| SRR9715741 | Leaf | 28.786 |
| SRR9715739 | Root | 5.360 |
| SRR9715742 | Root | 6.965 |
| SRR9715743 | Root | 4.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.329 |
| SRR8749028 | MeJA induced 9h | 17.501 |
| SRR8749029 | MeJA induced 9h | 8.528 |
| SRR8749030 | Uninduced | 8.664 |
| SRR8749031 | Uninduced | 6.386 |
| SRR8749032 | Uninduced | 28.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.927 |
| SRR8400027 | Control - Root | 13.637 |