Gene detail

Gene detail information of Glyur000906s00028239

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16490.1	7.00E-59	IQ-domain 26
NR	KHN26986.1	0	Protein IQ-DOMAIN 31 [Glycine soja]
Swissprot	tr\|Q8L4D8\|IQD31_ARATH	9.00E-14	Protein IQ-DOMAIN 31
trEMBL	tr\|V7CQ97\|V7CQ97_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32274.1}

Sequence

Transcript Sequence

>Glyur000906s00028239.1
CATTCACATTCATTGACATTGTTTCCCTTTCTTCTTCTTATTCTTCTTCTTCCTCTTCTTTATTACTTCTTCTCTCTTTTCTTAAACAATGCATTGTTTAATTCACCACTATGTTTCACCATTTTCAGGGAAATGAAAAGAGGCCTAATTTGTGAGCTGCAAAGCTTCATGACCCTTTTCCTTTTGTTGTCTCCAAAAAAACACCATGACTGAATTTTCGTAGCTTTGTCACTTTCACTATTTCAAGACCCTTTTTCTCTCTTTCAGTAGCATTTTCAGGGTTGTTCCTTCTCACTGAACCAATGGGGAGAGCCACAAGGTGGCTGAAGAGCTTGTTTGGGATAAAAGGAGACAGAGAACACAAACAAAACTCAAACTTTGGTGACCCCAGAAGCATGAAACATGTCTCTTCTTCTGATGTTGTTGCTGTTGGTCATTGTGAGAGCAATTCAAGGGTCTTGTGTCACAATCCAGCAACTATACCACCAAACATATCTCCAGCAGAAGCTGCTTGGTTACAATCTTTCTACACAGAAAAGGAGATTAAGGAGCAGAACAAGCATGCCATTGCTGTTGCTGCTGCCACAGCAGCAGCAGCTGATGCTGCTGTGGCTGCCGCAAATGCTGCTGTGGCAGTTGTTAGGCTAACCAGCAATGGAAGGGGCACCACCATGTTTGGTGGTACTAGACATGAGGAGATTTGGGCTTCTGTTAAGATTCAGACAGTGTTTAGAGGATACCTTGCAAGGAAGGCACTGAGAGCATTGAAAGGATTGGTGAAGATACAAGCACTTGTGAGAGGGTATTTGGTGAGGAAGCAAGCAACAGCAACCCTGCACAGTATGCAGGCTCTTATTAGAGCTCAAACTACAGTGAGGTCTCAGAAGAAATCTCACAGCAGGCTCATGAGCACAACAAAGAATGAAGCATATTCTAGATTTCAAAACAAAGCACGAAGATCCATGGAGAGATTTGATGACACTACTACTAGGAGTGAGTATATCACAGCTCCAATTCCAATCCACAGTAGAAGGATGTCATCATCTTCTTTTGATGGCAGCACCACAAATAACAACAACAACAACAACAACAGTTACAGTACTGTTGTTGATGGGATTGGGAGCCCCAAGATAGTGGAAATGGACACTGGCAGTGGCAGGCCTAAGTCAAGGTCTCGAAGGAGTACCAACACCTCAATTTCAGATTTTGGTGATGACCCTTCATTCCGAGAACTTCCCTTTTCCCTCCCAATCCCTTGTCCAACCCCTTATTACAGGAATTTCCAGGACTCTTCTGATTGGGGGTTAACGGGTGAAGAATGCAGGTTCTCTACAGCACAAAGCACTCCAAGGTTCACACATTCTTGTAGTTGTGGTGGCTCAGTTGTTGGGCCTGTGACACCAAAGAGTGTCTGCAATGGCAACTTATTCCTTAGGGATTATGGGAATTTTCCAAATTACATGGCTAGCACTCAGTCTTTTAAGGCCAAATTGAGGTCTCATAGTGCTCCAAAGCAAAGGCCAGAACCAGGTCCAAAGAGGAGGCTTTCCCTCAATGAAATGATGGAGTCTAGGATTAGTTTAAGTGGGGTTAGAATGCAGAAGTCTTGCTCACAGGTCCAGGAAGTCATTAATTTCAAGAATGCTGTGATGGGTAAGCTTCAGAATCACAAGTCCACAGAATCTTCCAGAGAGACAGACAGAAACTACTTCCACCAGAGGAGGTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00906	78389	80577	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000906s00028239.1	PF00612.22	IQ	135	153	8.10E-05
Glyur000906s00028239.1	PF00612.22	IQ	159	173	0.001
Glyur000906s00028239.1	PF13178.1	DUF4005	348	436	9.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.237
SRR1783600	control	0.290
SRR1783602	moderate drought stress	0.095
SRR1811619	moderate drought stress	0.109

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.125
DRR006520	Root Summer glycyrrhizin high producing strain	0.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.063
DRR006524	Root Summer glycyrrhizin low producing strain	0.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.738
SRR2868004	Drought Stress (root)	0.857
SRR2967015	Control (root)	1.150

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.911
SRR9715740	Leaf	17.961
SRR9715741	Leaf	3.735
SRR9715739	Root	0.172
SRR9715742	Root	0.199
SRR9715743	Root	0.059

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.041
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.181
SRR8400027	Control - Root	1.206