Gene detail

Gene detail information of Glyur000906s00028232

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25930.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_003516786.2	0	PREDICTED: receptor-like protein kinase 5-like [Glycine max]
COG	YP_004775215.1	6.00E-49	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P47735\|RLK5_ARATH	2.00E-144	Receptor-like protein kinase 5 (Precursor)
trEMBL	tr\|I1J4I5\|I1J4I5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01080.1}

Sequence

Transcript Sequence

>Glyur000906s00028232.1
ATGAAAATGTTCACTCTTCTGTCATCCTTGTTCTTCTTTTTCACCTATGCAAACTCTCAGTCTCAGTCTCTTCTGTATGATCAAGAACATACAATCCTATTGAAGATAAAGCAATACCTACAAAACCCATCATTCCTCAGTCACTGGACAACCCCATCAAACTCCTCCTCTCATTGCTCTTGGCCAGAAATCACTTGCAACAATGGTTCTGTCACTGAACTGGCTATGATCAACACCAACATCACTCAACCATTACCTCCTTTCCTATGTGACCTCAAAAACCTCACCTACGTTGATTTCCAATGGAATTACATCCCTGGGGAGTTCCCAACATCTCTATACAACTGCTCCAAGCTTGAGCACCTTGATCTCTCACAGAATTTCTTTGTTGGTAAGATCCCCGACGATATAGACCGCTTGGCTCGCCTGCGGTTCCTTAGCCTCGGTGGCAACAGCTTTTCCGGTGATATTCCAGGGAGCATTGGCTGGTTGAAGGAGCTAACAAGTCTTCAACTTTATCAGTGTCTTTTCAATGGTACTATTGTTGCTGATATTGGCAATTTGACCAACCTTGAGACCTTGTATTTGTTGCCATCAAGCTTGACCAAGTTAAACAAATTGAGGGTATTTCATATGTATGAGTCCAATTTGGTTGGGGAAATCCCTGAAACCATTGGACAAATGGTGGACTTGGAGGACTTGGATTTATCAGGAAACTATTTGGGTGGAGAAATTCCAAAGGGTATGTTCACTCTGAAGAATCTTAGCATACTTTATCTTTACAACAACAGCCTCTCTGGGGAGTTACATGGAGTGGTTGAAGCATTCAACTTAACAAGCCTAGATCTTTCAATGAATAATCTCACTGGGAAAATACCAGATGATTTTGGGAAGCTCAGAAAGTTGACCTACTTATGCTTGTCTATGAATCAGTTATCTGGCGCGGTTGCATCTAATAGTTTCACAGGAAGGCTGCCAGAGAACTTGTGCTACTATGGAAGGTTAGTTGGTTTAACTGCTTATGACAATAACCTGAGTGGGGAGTTGCCAGAATCTTTAGGTAGTTGTAGCAGCCTACAATATCTGAGAGTTGAGAATAATGAGTTTTCTGGTAACATTCCTAGTGGTTTATGGACATCTATGAATCTATCAACAATTATGATAAGCGAGAACAGGTTCACTGGCGAGCTTCCTGAGAGATTGTCTTGGAATGTTTCAACCCTTGCCATAAGTTACAATCAGTTTTCTGGTAGAATTCCACATGGAGTGTCTTTTTGGAAGAATGTGGTGGTGTTCAATGCCAGTAACAACCTTTTGAATGGAAGTATTCCACCGGAGCTAACGTCTCTTCCGCGGCTAACAACTCTTCTGCTCGATCATAACCAGCTCACTGCGCCACTTCCATCAGATATAGTATCATGGAAGTCCCTAATAACACTTGATTTGAGCCACAATCAACTCTCAGGTGAAATACCAGATGCAATTACTCAATTACCAGCCCTTAATGTATTGGACTTGTCAGAAAACAAAATCTCTGGCCAAATCCCACCTCAACTAGCCCTTCTGAGACTCACCAATCTCAACCTATCCTCCAATCATTTGAAGGGGAGGATTCCAAGTGAATTTGAAAACCTTCCTTGTGGTAGTAGCTTCATTACTGGCTTTCTTGTCTTTACTCATGGTGATCAGAATCTACAGAAAAAGAAAGCAAGAACTGAAGAAGTCATGGAAGCTCACTTCCTTTCAGAGGAGGCTGAAGGTGGGTACGGTGCGGTATACCGCGTAGCGGTCGATGGTTTAGGCTATGTCGCGGTGAAAAAGATATGGAGCAGCAGAAAACTAGAGCAGAACAATATCCGTCATAACAACATTGTGAAGTTGCTGTGTTGTATATCCAATGATGATTCCCTGCTCCTTGTCTATGAGTATCAGGAAAACCAAAGCCTTGATAGGTGGCTGCACAAGAAAAGTAAGGCATCATCAGCCATTGGAGCTGCACAAGATGTGAAAACAAGTAACATTCTGTTGGATTCTCAGTTCAATGCAAAAGTTGCTGATTTTGGTCTGGCCAAGATGTTGATCAAGCCAGAAGAACTTGCCACCATGTCAGCTGTAGCTGGCACATTTGGCTATATTGCTCCAGAATATGCTCAAACAACACGAGTCAATGAGAAGATAGATGTCTACAGCTTTGGAGTTGTCCTATTGGAACTGACAACCGGAAAAGAAGCTAATCATGGAGATGAATACTCATCTCTTGCAGAATGGGCGTGGCGCCATATTCAGGTAGGAAGCGATATAGAAGATCTTCTAGACAATGAAGTTATGGAAGCAAGTTACTTGGATGAAATGTGCAGCATCTTCAAACTTGGGGTCATGTGCACTTCAACACTTCCAGCTAGTAGACCTTCCATGAAGGAGGTCTTGAAGATATTGCTCAGCTGCAGCGATCCACACGCCAATAATGCCGAGAAGAATACCGGTTTCTATGATGCTGTTCCGCTTCTTAAGAACTCAAAATGGGAAAAGCAGGTGGAAAGTTTGTGATGATAGCTAGGTAGTTTTAGTTTACATCTAGTTTGAGGATTTGACTCATCTAAACCGAGGGAATACACTTTTAGAAGATAAAAGTGCAAGGATAACCGTTGATTGAAAAATCAACAGTTGATTTTGTGATAAAAATACATACACATGCATAACAAACTATGAAGTTGGTTTTCTTATTAACGGTTATAATTTTGCACTTCATCTTTTAAACTTTCCCCTTCACTTCAGAGGAGGCAAATCCCCGGTATGAGTATCCTATCTGATAATAACACAGAAAGGTGACAAATGAGTCTTGAAGTTAGAATTTAAGACAGAAAGGTGACAAATGAGTCTTGAAGTTAGAATTTAAGACAATGAAACTCATAGTATTGCATCTGTATAACTCAGAAGAGCATATGAATCAGCTCAGATAAAGTGTACTTACANGTAGGGGATTACTAGTAATAGAAGTGCTTTGCAAAATTGGAAAAGAAAATTGAGCTCGGTTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00906	23610	27316	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000906s00028232.1	PF08263.7	LRRNT_2	29	67	1.00E-05
Glyur000906s00028232.1	PF00560.28	LRR_1	118	139	0.081
Glyur000906s00028232.1	PF13516.1	LRR_6	231	248	0.81
Glyur000906s00028232.1	PF00560.28	LRR_1	277	299	0.0039
Glyur000906s00028232.1	PF13855.1	LRR_8	476	534	6.40E-08
Glyur000906s00028232.1	PF00069.20	Pkinase	585	659	7.30E-06
Glyur000906s00028232.1	PF00069.20	Pkinase	668	810	9.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.538
SRR1783600	control	13.428
SRR1783602	moderate drought stress	10.443
SRR1811619	moderate drought stress	10.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.010
DRR006520	Root Summer glycyrrhizin high producing strain	6.900
DRR006521	Root Winter glycyrrhizin high producing strain	21.967
DRR006522	Root Winter glycyrrhizin high producing strain	20.878
DRR006523	Root Summer glycyrrhizin low producing strain	15.516
DRR006524	Root Summer glycyrrhizin low producing strain	15.732
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.228
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.259

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.327
SRR2868004	Drought Stress (root)	35.166
SRR2967015	Control (root)	28.515

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.621
SRR9715740	Leaf	3.228
SRR9715741	Leaf	8.068
SRR9715739	Root	3.162
SRR9715742	Root	13.466
SRR9715743	Root	11.894

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.816
SRR8749028	MeJA induced 9h	91.196
SRR8749029	MeJA induced 9h	56.068
SRR8749030	Uninduced	32.142
SRR8749031	Uninduced	23.741
SRR8749032	Uninduced	30.347

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.822
SRR8400027	Control - Root	16.952