Gene detail information of Glyur000905s00030407 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_008371252.1 | 1.95E-09 | PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 5.00E-08 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|J9JES3|J9JES3_MALDO | 2.00E-08 | RnaseH protein {ECO:0000313|EMBL:CBX33402.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 47935 | 48488 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000905s00030407.1 | PF13456.1 | RVT_3 | 22 | 97 | 5.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.155 |
| SRR1783600 | control | 0.154 |
| SRR1783602 | moderate drought stress | 0.612 |
| SRR1811619 | moderate drought stress | 0.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.632 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.801 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.295 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.474 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.527 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.908 |
| SRR2868004 | Drought Stress (root) | 1.174 |
| SRR2967015 | Control (root) | 1.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.416 |
| SRR9715740 | Leaf | 0.123 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.307 |
| SRR9715742 | Root | 1.802 |
| SRR9715743 | Root | 0.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.458 |
| SRR8749028 | MeJA induced 9h | 5.461 |
| SRR8749029 | MeJA induced 9h | 2.739 |
| SRR8749030 | Uninduced | 1.096 |
| SRR8749031 | Uninduced | 2.266 |
| SRR8749032 | Uninduced | 2.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.042 |
| SRR8400027 | Control - Root | 1.620 |