Gene detail information of Glyur000905s00030406 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65670.1 | 8.00E-28 | indole-3-acetic acid inducible 9 |
| NR | XP_004509715.1 | 8.37E-79 | PREDICTED: auxin-responsive protein IAA9-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q38827|IAA9_ARATH | 2.00E-42 | Auxin-responsive protein IAA9 |
| trEMBL | tr|B7FIH2|B7FIH2_MEDTR | 3.00E-73 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 44793 | 46653 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000905s00030406.1 | PF02309.11 | AUX_IAA | 68 | 139 | 5.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.600 |
| SRR1783600 | control | 20.989 |
| SRR1783602 | moderate drought stress | 20.692 |
| SRR1811619 | moderate drought stress | 19.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.406 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.519 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.754 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.603 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.036 |
| SRR2868004 | Drought Stress (root) | 3.364 |
| SRR2967015 | Control (root) | 4.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.496 |
| SRR9715740 | Leaf | 1.382 |
| SRR9715741 | Leaf | 1.763 |
| SRR9715739 | Root | 3.647 |
| SRR9715742 | Root | 12.448 |
| SRR9715743 | Root | 2.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.380 |
| SRR8749028 | MeJA induced 9h | 1.996 |
| SRR8749029 | MeJA induced 9h | 0.319 |
| SRR8749030 | Uninduced | 0.101 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.696 |
| SRR8400027 | Control - Root | 11.685 |