Gene detail information of Glyur000905s00030404 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65660.1 | 1.00E-23 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_003628845.1 | 2.41E-61 | hypothetical protein MTR_8g067590 [Medicago truncatula] |
| Swissprot | tr|Q9LSK9|Y5566_ARATH | 1.00E-44 | Uncharacterized protein At5g65660 |
| trEMBL | tr|G7LHT7|G7LHT7_MEDTR | 9.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:AFK49322.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00905 | 25728 | 27506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 276.819 |
| SRR1783600 | control | 277.427 |
| SRR1783602 | moderate drought stress | 180.033 |
| SRR1811619 | moderate drought stress | 179.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 374.128 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 371.063 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.483 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 141.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 141.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.816 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 123.237 |
| SRR2868004 | Drought Stress (root) | 164.241 |
| SRR2967015 | Control (root) | 178.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.667 |
| SRR9715740 | Leaf | 13.212 |
| SRR9715741 | Leaf | 9.811 |
| SRR9715739 | Root | 211.350 |
| SRR9715742 | Root | 343.761 |
| SRR9715743 | Root | 288.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.588 |
| SRR8749028 | MeJA induced 9h | 43.050 |
| SRR8749029 | MeJA induced 9h | 18.090 |
| SRR8749030 | Uninduced | 36.988 |
| SRR8749031 | Uninduced | 9.328 |
| SRR8749032 | Uninduced | 31.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 190.198 |
| SRR8400027 | Control - Root | 202.402 |