Gene detail information of Glyur000904s00024074 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39860.1 | 3.00E-98 | |
| NR | XP_003552066.1 | 0 | PREDICTED: uncharacterized protein LOC100804656 isoform X1 [Glycine max] |
| Swissprot | tr|Q9SIE0|ALKB2_ARATH | 5.00E-07 | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 |
| trEMBL | tr|I1MYS4|I1MYS4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00904 | 68501 | 71757 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000904s00024074.1 | PF13266.1 | DUF4057 | 6 | 304 | 3.80E-140 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.053 |
| SRR1783600 | control | 48.027 |
| SRR1783602 | moderate drought stress | 34.709 |
| SRR1811619 | moderate drought stress | 34.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.861 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 46.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.802 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.774 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.637 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 72.839 |
| SRR2868004 | Drought Stress (root) | 32.504 |
| SRR2967015 | Control (root) | 47.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.604 |
| SRR9715740 | Leaf | 10.330 |
| SRR9715741 | Leaf | 8.868 |
| SRR9715739 | Root | 14.967 |
| SRR9715742 | Root | 18.992 |
| SRR9715743 | Root | 17.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 104.221 |
| SRR8749028 | MeJA induced 9h | 71.977 |
| SRR8749029 | MeJA induced 9h | 62.960 |
| SRR8749030 | Uninduced | 14.354 |
| SRR8749031 | Uninduced | 4.639 |
| SRR8749032 | Uninduced | 8.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.788 |
| SRR8400027 | Control - Root | 34.076 |