Gene detail information of Glyur000902s00028782 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 1.00E-35 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_004515062.1 | 1.96E-92 | PREDICTED: TMV resistance protein N-like [Cicer arietinum] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 5.00E-27 | TMV resistance protein N |
| trEMBL | tr|V7C5B4|V7C5B4_PHAVU | 3.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:ESW24475.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00902 | 93259 | 98346 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000902s00028782.1 | PF00931.17 | NB-ARC | 76 | 198 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.008 |
| SRR1783600 | control | 0.009 |
| SRR1783602 | moderate drought stress | 0.013 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.139 |
| SRR2868004 | Drought Stress (root) | 2.391 |
| SRR2967015 | Control (root) | 0.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.280 |
| SRR9715740 | Leaf | 7.501 |
| SRR9715741 | Leaf | 6.740 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.184 |
| SRR9715743 | Root | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.506 |
| SRR8749028 | MeJA induced 9h | 4.761 |
| SRR8749029 | MeJA induced 9h | 7.192 |
| SRR8749030 | Uninduced | 4.895 |
| SRR8749031 | Uninduced | 3.747 |
| SRR8749032 | Uninduced | 4.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.384 |
| SRR8400027 | Control - Root | 0.993 |