Gene detail information of Glyur000901s00035702 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38440.1 | 2.00E-17 | SCAR homolog 2 |
| NR | KEH28808.1 | 5.00E-24 | SCAR2, putative [Medicago truncatula] |
| Swissprot | tr|Q5XPJ9|SCAR2_ARATH | 6.00E-22 | Protein SCAR2 |
| trEMBL | tr|A0A072UI74|A0A072UI74_MEDTR | 2.00E-24 | SCAR2, putative {ECO:0000313|EMBL:KEH28808.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00901 | 2695 | 2907 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.074 |
| SRR1783600 | control | 2.465 |
| SRR1783602 | moderate drought stress | 4.541 |
| SRR1811619 | moderate drought stress | 5.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.973 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.459 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.761 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.998 |
| SRR2868004 | Drought Stress (root) | 7.784 |
| SRR2967015 | Control (root) | 7.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.153 |
| SRR9715740 | Leaf | 1.726 |
| SRR9715741 | Leaf | 1.982 |
| SRR9715739 | Root | 1.843 |
| SRR9715742 | Root | 9.087 |
| SRR9715743 | Root | 5.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.311 |
| SRR8749028 | MeJA induced 9h | 3.252 |
| SRR8749029 | MeJA induced 9h | 0.450 |
| SRR8749030 | Uninduced | 0.088 |
| SRR8749031 | Uninduced | 0.138 |
| SRR8749032 | Uninduced | 0.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.036 |
| SRR8400027 | Control - Root | 8.823 |