Gene detail information of Glyur000900s00031452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 2.00E-60 | Protein of unknown function (DUF640) |
| NR | KHN36698.1 | 1.57E-87 | hypothetical protein glysoja_001429 [Glycine soja] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 3.00E-76 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|C6SYI6|C6SYI6_SOYBN | 5.00E-87 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU14309.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00900 | 62569 | 68154 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000900s00031452.1 | PF04852.7 | DUF640 | 23 | 149 | 1.60E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 117.763 |
| SRR1783600 | control | 117.650 |
| SRR1783602 | moderate drought stress | 119.607 |
| SRR1811619 | moderate drought stress | 119.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 285.637 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 283.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.529 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 137.593 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 138.711 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.323 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.599 |
| SRR2868004 | Drought Stress (root) | 1.912 |
| SRR2967015 | Control (root) | 2.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.852 |
| SRR9715740 | Leaf | 0.166 |
| SRR9715741 | Leaf | 0.683 |
| SRR9715739 | Root | 84.439 |
| SRR9715742 | Root | 114.051 |
| SRR9715743 | Root | 105.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.452 |
| SRR8749028 | MeJA induced 9h | 16.106 |
| SRR8749029 | MeJA induced 9h | 12.201 |
| SRR8749030 | Uninduced | 2.899 |
| SRR8749031 | Uninduced | 0.765 |
| SRR8749032 | Uninduced | 2.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.612 |
| SRR8400027 | Control - Root | 45.777 |